LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g1397	ATGTTTCGTCGCCAATTCTCAACATGGACTTTCCTTCTTCTATTCTTATTCTTCTTCACACTTTTCACATCTTCCATGTCCCAATCTCAATCCCCTTTCGATGCAAAGAAAAAGCGCATGAGAGACAAAGTTCGCAACATGTTTTACCATGCGTATGACAATTACATGACGTATGCATTTCCGCATGATGAATTAAAGCCTCTCTCTAAAACTTTCACCAACTCCCTCAGCGAGCTGGGAAATTTGAAGCTTGAGCACTTGCCACAAGACTACAATGGCTCTGCCCTTACGCTTATTGAATCACTATCTAGCCTTCTTATTATGGGCAACAATACTGAATTCGAGAGGGCAGTGCTCTGGCTTTCTGAGAATCTAACATTTGACGTTGATGCACGCATAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTTGTCTCTGCTCATTTACTTGCGTCTGATTCTTCAAAGGGGTTGTTTCAAGGGGCTTACAAGAATCAGCTGCTAGTTCTCGCTGAAGATTTAGGAAAACGCTTTCTACCAGCGTTCAACACACCCACTGGATTGCCTTATGCATGGATTAACTTGAAGTCTGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGTGCTTTATCAAAATTGACAGGTGACCCCAGATATGAATTAGCAGCTTTACGAGCTCTTCATAAGCTATGGAGCATGCGGAGCTCGTTGAATTTATTTGGAACCACACTGGACGTGGCAACTGGGGAATGGATTGAGTTTTCATCAGGAATTGGAGCCGGCGTTGATTCCTTCTATGAGTATCTACTTAAAGGCCATATCCTTTTTGGGAATGAAGACTTGTGGAGAATGTTTCATTCTGCTTACCTTGCTGTGCAGAAATATTTCAGATATGGTCCTTGGTACCATGAAGCTGATATGAGGACGGGAAGAGCAACTTATTGGCAGCTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTACTGGAGATGTTATAGCTGCTAATTCATCACACCGTGAATTCTTTCATGTGTGGCAGAGATTTGGAGTGCTGCCAGAGAGGTATTTGTTGGACCACCAGATGCTTCACCCTACTGAAAAATATTACCCATTACGCCCTGAATTGGCTGAGTCAACATTCTACTTATATCAAGCAACTAAAGATCCATGGTATCTTGATGTGGGTGAATCAATAATCAATTCTCTTAATTCATACACCAAAGTGAAAGGTGGGTTTGCAAGCATCAAGGATGTGTCAACCATGCAATTGGAAGATCATCAACATAGTTTTTTTCTTGCTGAAACGTGCAAATATCTATATCTTCTATTTGATGATTCATTTTTACTTGAGAGAAATTACATATTTACCACCGAAGGTCACCCACTACCAGTACTAAGCACTTGGCATGAAAGGCTACCAGAAACTTACATTCCAACTAATTGGACTTTCATGAAGAGGCAGCAAGAAGCAAATCGAATCAGCTCGATGTCTTTGCAAGTGTGCCCGGCTATGAATTTAATTTCAGGTCACCATATTAAGAGTGTGTGCCACATCCCCGACAGTCGTAGTGATTTCAGATGTATGACTGATGAAGATTGTGGAGTTGATTCCACTACATGTAGACGAAGGTCATGTAGTACAGCTGGTTATTGTGGTCTTTGGCTCTTAATTTAA	1725	0.4151	MFRRQFSTWTFLLLFLFFFTLFTSSMSQSQSPFDAKKKRMRDKVRNMFYHAYDNYMTYAFPHDELKPLSKTFTNSLSELGNLKLEHLPQDYNGSALTLIESLSSLLIMGNNTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDSSKGLFQGAYKNQLLVLAEDLGKRFLPAFNTPTGLPYAWINLKSGVMENETTETSTSGCGSLILEMGALSKLTGDPRYELAALRALHKLWSMRSSLNLFGTTLDVATGEWIEFSSGIGAGVDSFYEYLLKGHILFGNEDLWRMFHSAYLAVQKYFRYGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLTGDVIAANSSHREFFHVWQRFGVLPERYLLDHQMLHPTEKYYPLRPELAESTFYLYQATKDPWYLDVGESIINSLNSYTKVKGGFASIKDVSTMQLEDHQHSFFLAETCKYLYLLFDDSFLLERNYIFTTEGHPLPVLSTWHERLPETYIPTNWTFMKRQQEANRISSMSLQVCPAMNLISGHHIKSVCHIPDSRSDFRCMTDEDCGVDSTTCRRRSCSTAGYCGLWLLI*	575

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan1g1397	574	Gene3D	-	29	491	IPR012341	GO:0005975
	Lan1g1397	574	PANTHER	ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2	16	573	IPR044674	GO:0004571\|GO:1904380\|GO:1904382
	Lan1g1397	574	PRINTS	Glycosyl hydrolase family 47 signature	47	67	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	PRINTS	Glycosyl hydrolase family 47 signature	132	150	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	PRINTS	Glycosyl hydrolase family 47 signature	182	201	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	PRINTS	Glycosyl hydrolase family 47 signature	273	290	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	PRINTS	Glycosyl hydrolase family 47 signature	330	346	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	PRINTS	Glycosyl hydrolase family 47 signature	387	411	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	PRINTS	Glycosyl hydrolase family 47 signature	446	466	IPR001382	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	SUPERFAMILY	Seven-hairpin glycosidases	38	494	IPR036026	GO:0004571\|GO:0005509\|GO:0016020
	Lan1g1397	574	PANTHER	ALPHA-MANNOSIDASE I MNS5	16	573	-	-
	Lan1g1397	574	Pfam	Glycosyl hydrolase family 47	47	480	IPR001382	GO:0004571\|GO:0005509\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g1397	Lan-Chr1	23725964	23730384	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan1g1397	12	571	Glycoside Hydrolase	AT1G27520	75.844	0.0	906

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g1397	K10084		-	gmx:100793674	1013.45

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan1g1397	1	23725964	23730384	Lan1g1397	1	23725964	23730384	ECH