Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1395 ATGGAATTCCACAGATTCAATAGCAGTAGTGGTTCTTCATCTGACTCTAACCACCACCTTCAACCATGTTCATCTTCACTTTCTTCACAACGCAGCATGGCATCAATTCCTTCCCTTAACTCAATTCATCACCCTTCCACCGCCACTCACAATCTTATCACAACTCTCACATCCCACACTTCCTACACTTCCTCTCTAACCCTTTCTGGAGAGTTTCTCTTCACAGGTTCATCTGATAGAGAAATCAAATCATGGAACCGAACCCCTTTGGGATTTTCCAATTATAACATGGTAGTTTCTGCTGGAAAGGGTGCTATCAAGTCCCTAGTACTTCACTCCAACAAACTTTTCAGTGCTCACCAAGACCAAAAAATCCGTGTTTGGAAAATTAGTGATAACCAAAACCATGAACAAAAGTATACCCTTTTAGCAACGCTTCCAACATTTAGTGACCGTATCTCAAAGGGTTTAATCCCAAAGAACCATGTTAAGATTAGAAGGCACAAAAAATGCACATGGGTTCACCATGTTGACACAGTTTCTGCCCTAGCCTTATCCAAAGATGGAACCTTGCTCTATTCGGTTTCATGGGACCGGACGATCAAGATTTGGAGAACAAAAGATTTCAAGTGTTTGGAATCATTAATCAATGCACATGATGATGCAATAAATGCTGTAGCAGTTTCAGATGATGGACATGTATACACTGGATCAGCAGATAAGAGAATCAAAGTTTGGAAGAGAAACCAAGATGAAAAAACACACACCCTTTTGGAATCATTAGAGAAACATAACTCTGGGATTAATGCATTAGCTCTTACCAATAGTAATGGCACGAATTTATTGTTATACTCTGGTGCATGTGATAGATCAATATTGGTTTGGGAGAAGGGACATGATGGTAAAATGGTAGTGGTGGGTGCACTGAGGGGGCACACTAAGTCAATTTTGTGTTTGGCTGTGGTGGTGGATTTAATATGCAGTGGTTCTGAGGATAAAACTATTCGAATTTGGAGAAGTATTGATCATAAAGAGTATTATTGTTTAGCTGTTTTAGAAGGGCATAGAGGTCCAATTAAGAGCCTAACTATGGTTGAATATCATTGTGACCCTTCTGAAGAAGCCTCTTTCATTGTCTATAGTGGCAGTTTGGACTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTCTCATCTAA 1197 0.3977 MEFHRFNSSSGSSSDSNHHLQPCSSSLSSQRSMASIPSLNSIHHPSTATHNLITTLTSHTSYTSSLTLSGEFLFTGSSDREIKSWNRTPLGFSNYNMVVSAGKGAIKSLVLHSNKLFSAHQDQKIRVWKISDNQNHEQKYTLLATLPTFSDRISKGLIPKNHVKIRRHKKCTWVHHVDTVSALALSKDGTLLYSVSWDRTIKIWRTKDFKCLESLINAHDDAINAVAVSDDGHVYTGSADKRIKVWKRNQDEKTHTLLESLEKHNSGINALALTNSNGTNLLLYSGACDRSILVWEKGHDGKMVVVGALRGHTKSILCLAVVVDLICSGSEDKTIRIWRSIDHKEYYCLAVLEGHRGPIKSLTMVEYHCDPSEEASFIVYSGSLDCDIKVWQIFVPLI* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1395 398 CDD WD40 52 392 - -
Lan1g1395 398 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 11 396 IPR045182 -
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 216 247 - -
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 338 IPR001680 GO:0005515
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 214 IPR001680 GO:0005515
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 296 IPR001680 GO:0005515
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
Lan1g1395 398 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Lan1g1395 398 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Lan1g1395 398 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Lan1g1395 398 Gene3D - 6 162 IPR015943 GO:0005515
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 204 - -
Lan1g1395 398 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 11 396 - -
Lan1g1395 398 Gene3D - 163 395 IPR015943 GO:0005515
Lan1g1395 398 SMART WD40_4 49 86 IPR001680 GO:0005515
Lan1g1395 398 SMART WD40_4 345 392 IPR001680 GO:0005515
Lan1g1395 398 SMART WD40_4 208 247 IPR001680 GO:0005515
Lan1g1395 398 SMART WD40_4 254 296 IPR001680 GO:0005515
Lan1g1395 398 SMART WD40_4 92 129 IPR001680 GO:0005515
Lan1g1395 398 SMART WD40_4 166 205 IPR001680 GO:0005515
Lan1g1395 398 SMART WD40_4 302 339 IPR001680 GO:0005515
Lan1g1395 398 SUPERFAMILY WD40 repeat-like 50 393 IPR036322 GO:0005515
Lan1g1395 398 MobiDBLite consensus disorder prediction 1 27 - -
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 216 256 IPR001680 GO:0005515
Lan1g1395 398 Pfam WD domain, G-beta repeat 174 204 IPR001680 GO:0005515
Lan1g1395 398 Pfam WD domain, G-beta repeat 258 295 IPR001680 GO:0005515
Lan1g1395 398 Pfam WD domain, G-beta repeat 348 391 IPR001680 GO:0005515
Lan1g1395 398 Pfam WD domain, G-beta repeat 210 247 IPR001680 GO:0005515
Lan1g1395 398 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
Lan1g1395 398 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 86 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1395 Lan-Chr1 23689859 23691310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1395 216 392 Acyl Lipid Metabolism Gene Families AT3G18860 26.923 5.61e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1395 - - ahf:112722395 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1395 1 23689859 23691310 Lan1g1395 1 23689859 23691310 ECH