Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1062 ATGGCACATTCCTCTTCAATCCTCGATTCTCTCGGCGAAGAAATTCTGAGAATCATTACTCCTGTTTCAATCTGCATGTTCCTCGTCGTTATCCTCGTTTCCATTCTCAACACTAACTCCTCTTCTTCCTCTTTCTCCGTTTCCAGCATCGCCACCATTGCTTATTCCGAATCCACTTCCGATTCCGTTTGGGACAAATTCATCGGCGCTCTTTTCAATTCCCTCGCTTTCGTCTTCTTCATCACTCTCGCTACTTTCATCTTAGTCCTTCTCTTCTATTTCCGTTGCACCAGGTTCCTCAAACTCTACATGGCTTTCTCCGCTTTCGTTGTTCTAGGTTTTCTCGGTGGTCAAATCTCACTCTTTCTTATTCAGCATTTTGATACTCCAATTGATTGCGTTACGTTTTTAATTGCTTTGTTTAATTTTGCTGTTGTTGGTGTTGTTGCTGTGTTTATGTCCAAAATGGCTATTGTTGTGACTCAAGGGTATTTGGTTCTTATTGGAATTTTGGTAGCTTATTGGTTTACTATGTTACCTGAATGGACTACTTGGTCTATGCTTGTTGCTTTGGCTTTGTATGATCTTGCTGCTGTTCTTTTACCTGTTGGTCCTTTAAGGCTTTTGGTTGAGCTTGCTATATCCAGAGATGAAGAGATTCCGGCTTTGGTTTACGAGGCTAGGCCTGTTAACCATCATATTTTCGATGCGAGGACGGATGCTGTCACTCAGAGGAGGTTGTGGAGAGATAGGAGGATTGATGATGATGATGATGATTCTAATGTGAATGTTAACTCTGTGTTGAGTCATGGTCATGGCCTTAATGATGAGTTGAACTCGAATATGGATGAAGAGAATGGTTTGACTTCAATTTCAAATGCCAATGTCGCGGATCGAATACATGGTGAGATAAACTTGGTTAGGGAAAATGGTTCTTCAAATTCAGATTTGAATTCTAATATATTGTATGACAGAAATCTGGTCACGGTAGAAGAGGGGCGGGTTCGAGAAACTAATACAGACGTTTCTACTCCGCTGATTGATCGTGGAGTGACTGTCAGGCTCCATGGAGTAGAGGAGTCTGCGTCGAGTGAAAGTTTAATGCTAGAGGGAATTGGATTGGGCTCATCTGGTGCAATCAAGTTAGGCTTGGGTGATTTTATCTTCTACAGTGTTTTGGTCGGAAGAGCAGCAATGTATGATTTTATGACAGTGTATGCATGTTATCTCGCTATCATTGCTGGTCTCGGCGTAACTTTGATTCTTCTGGCTGTATATCGGAAAGCCCTGCCTGCTCTTCCTGTTTCAGTAGCACTAGGTGTGTTGTTTTATTTCTTGACCAGGCTCTTACTTGAAGTATTTGTAGTACAGTGCTCCTTAAATCTCCTGATGTTCTAA 1398 0.4185 MAHSSSILDSLGEEILRIITPVSICMFLVVILVSILNTNSSSSSFSVSSIATIAYSESTSDSVWDKFIGALFNSLAFVFFITLATFILVLLFYFRCTRFLKLYMAFSAFVVLGFLGGQISLFLIQHFDTPIDCVTFLIALFNFAVVGVVAVFMSKMAIVVTQGYLVLIGILVAYWFTMLPEWTTWSMLVALALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNHHIFDARTDAVTQRRLWRDRRIDDDDDDSNVNVNSVLSHGHGLNDELNSNMDEENGLTSISNANVADRIHGEINLVRENGSSNSDLNSNILYDRNLVTVEEGRVRETNTDVSTPLIDRGVTVRLHGVEESASSESLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGVTLILLAVYRKALPALPVSVALGVLFYFLTRLLLEVFVVQCSLNLLMF* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1062 465 Pfam Presenilin 12 455 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lan1g1062 465 PANTHER PRESENILIN 5 465 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lan1g1062 465 PANTHER PRESENILIN 5 465 - -
Lan1g1062 465 Gene3D Presenilin 370 457 IPR042524 -
Lan1g1062 465 PRINTS Presenilin family signature 19 29 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lan1g1062 465 PRINTS Presenilin family signature 178 185 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lan1g1062 465 PRINTS Presenilin family signature 195 212 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lan1g1062 465 SMART psh_8 68 451 IPR006639 GO:0004190|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1062 Lan-Chr1 20802761 20804404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1062 3 465 Miscellaneous Gene Families AT2G29900 53.664 4.84e-127 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1062 K04505 - gmx:100780823 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1062 1 20802761 20804404 Lan1g1062 1 20802761 20804404 ECH