Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1044 ATGTGTAGCAATCGAGGTTTTCAACAACACGTGTTCTCTCTATTGCAGAGCTGCAACAATATAAGAAATCTCATTCAAATCCACACCCAAATAGTCCTCAATGGCCTCTCTCAAAAGAACAACATTCTCTTCAAGCTTCTATCTTTCTATGTATTTTCTGGTCATCTTCAACATGCCCTCAAACTTTTCTCTAAAATTGATAACCCAAGTACCACACTTTGGAACCAGATTATTAGAGGCTATGCTAGCACCCAAATGCCTTGGAAATCTGTGCTATTTTATAAACAAATGGTTTCAGCTAAGGGCATCCCTGATGGGTTCACATATTCGTTTCTTTTGAGTGCATGTGCGCGTGGTGGGTTGATAAGAGAAGGGGAACAGGTTCATGGGGCAATTTTGGTAAAAGGGTATTGCTCTAATGTGTTTCTGGACACAAATTTGGTTAATTTATATGCTGGGAGTGGTGGTGTTGAGAAAGCACGCAAAGTGTTTGATAATATGAGTCAGAGAAGTGTTGTTAGCTGGAATTCTATGCTTGCTGGGTATATTAGATGCTGTGATTTTGATGGAGCAAGAAGGGTTTTTGATGAGATGCCAATTAGGAATGTTGTGTCTTGGACGACCATGATTGCTGGGTATGCTCGGAATGGGCAGTGTAAACAGGCTTTGTTGTTGTTCGGTGAGATGAGGAGAGCACATGTGGAATTGGATCAGGTTGCATTGGTAGCAGCTTTATCAGCATGTGCTGAATTAGGGGACCTGAAGTTGGGAAGATGGATACATTGGTATGTTCAACAGAGATTTGTTGTTAGGAACCAGCTGCAGCCTTTGGTGCGTTTGAGTAATGCACTGATACACATGTATGCCAGTTGTGGAATCATCGATGAAGCTTATCGGGTGTTTACCATGATGCCTCAGAAAAGCACTGTGTCTTGGACTAGCATCATCACTGCTTTCGCAAAACAAGGCCTTGGGAAGGAAGCCCTTGGTATGTTTAAGACTATGATAAGTGATGGTATGCGAGTAGATGAAGTAATAAGACCTGATGAAATAACCTTCCTTGGAGTTCTTTGTGCTTGCAGCCATGCAGGATTTGTTGATGAAGGACGCCAAATTTTTGTGTCCATGAACCAAACTTGGGGAATCAGCCCGACGATTGAACACTATGGATGCATGGTTGATCTCTTGAGCCGTGCTGGTTTCTTAGACGAAGCATGTGGACTTATTGAAACTATGCCTTTAAAGCCAAATGATGCTGTATGGGGAGCCCTTCTCGGTGGTTGCCGAATACACAAGAATTCGGAGCTTGCATCAGGAGTGGCAAACAAGTTAATAGCCGAGCTCAACACGGATCAAGCTGCAGGGTATCTTGTGCTCCTGTCGAACATATATGCTTTTGCTAAAAGGTGGCAGGATGTGATTACTGTGAGACAGAAAATGATTGTAATGGGTGTTAAAAAGCCTCCAGGTCATAGTTGGATCCAGATTAATGGAGTTGTACATGATTTTGTGGCTGGTGACATGACTCATAAGCATTCATCTTTTATCTATGAAATCCTTTATGAGATCACCAAGCAAACCCATCAGGAAGGTTATGAACCAGACATAGCAGATATAATGTTCTTTGACATGGACACAACCGTTCCGACCGAACCGTTCTGA 1662 0.4248 MCSNRGFQQHVFSLLQSCNNIRNLIQIHTQIVLNGLSQKNNILFKLLSFYVFSGHLQHALKLFSKIDNPSTTLWNQIIRGYASTQMPWKSVLFYKQMVSAKGIPDGFTYSFLLSACARGGLIREGEQVHGAILVKGYCSNVFLDTNLVNLYAGSGGVEKARKVFDNMSQRSVVSWNSMLAGYIRCCDFDGARRVFDEMPIRNVVSWTTMIAGYARNGQCKQALLLFGEMRRAHVELDQVALVAALSACAELGDLKLGRWIHWYVQQRFVVRNQLQPLVRLSNALIHMYASCGIIDEAYRVFTMMPQKSTVSWTSIITAFAKQGLGKEALGMFKTMISDGMRVDEVIRPDEITFLGVLCACSHAGFVDEGRQIFVSMNQTWGISPTIEHYGCMVDLLSRAGFLDEACGLIETMPLKPNDAVWGALLGGCRIHKNSELASGVANKLIAELNTDQAAGYLVLLSNIYAFAKRWQDVITVRQKMIVMGVKKPPGHSWIQINGVVHDFVAGDMTHKHSSFIYEILYEITKQTHQEGYEPDIADIMFFDMDTTVPTEPF* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1044 553 Gene3D Tetratricopeptide repeat domain 170 268 IPR011990 GO:0005515
Lan1g1044 553 Pfam PPR repeat family 201 247 IPR002885 -
Lan1g1044 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Lan1g1044 553 Pfam E motif 431 495 IPR046848 -
Lan1g1044 553 PANTHER OS09G0411600 PROTEIN 4 522 - -
Lan1g1044 553 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lan1g1044 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Lan1g1044 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 522 - -
Lan1g1044 553 TIGRFAM PPR: pentatricopeptide repeat domain 173 202 IPR002885 -
Lan1g1044 553 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Lan1g1044 553 TIGRFAM PPR: pentatricopeptide repeat domain 204 237 IPR002885 -
Lan1g1044 553 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Lan1g1044 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lan1g1044 553 Pfam PPR repeat 73 99 IPR002885 -
Lan1g1044 553 Pfam PPR repeat 310 339 IPR002885 -
Lan1g1044 553 Pfam PPR repeat 145 170 IPR002885 -
Lan1g1044 553 Pfam PPR repeat 282 307 IPR002885 -
Lan1g1044 553 Pfam PPR repeat 388 412 IPR002885 -
Lan1g1044 553 Pfam PPR repeat 107 136 IPR002885 -
Lan1g1044 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 201 IPR002885 -
Lan1g1044 553 Gene3D Tetratricopeptide repeat domain 269 345 IPR011990 GO:0005515
Lan1g1044 553 Gene3D Tetratricopeptide repeat domain 9 169 IPR011990 GO:0005515
Lan1g1044 553 Gene3D Tetratricopeptide repeat domain 346 532 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1044 Lan-Chr1 20700901 20703592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1044 6 535 Glycoside Hydrolase AT3G49170 31.793 1.45e-86 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1044 - - aip:107610465 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1044 1 20700901 20703592 Lan1g1044 1 20700901 20703592 ECH