Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0197 ATGACTGATACAAGACCAGATACACCCCTGATGCCACAATCGTCGCGGAATCTCCCCGACTTCAAGAAATCGGTTAAATTGAAGTATGTAAAGCTCGGTTATCATTACCTCATCACCCATGGAATGTACCTCTTTCTTTCCCCCCTTGTGGTTCTGATTTTTGCTCAGCTCTCCACCTTCTCCCTCCAAGACATTTATGATCTCTGGGAGCATCTACAATACAATTTGGTATCTGTTATTCTTTGTTCAGCTCTCCTTGTTTTTTTATCCACCCTCTACTTTATGACTCGTCCTCGACCAGTGTACCTTGTCAATTTCTCCTGTTACAAGCCTGAAGAGTCTCACAAATGCACAAAAAGGATATTTATGGATCATTCAAGGATGGCTGGTTCTTTCAGTGATGAAAATCTTGAATTCCAGAGGAAGATCCTTGAGAGATCTGGCCTTGGGGACTCTACTTACCTTCCAGAGGCTGTTCTAAACATTCCTCCAAACCCTTCGATGAAAGAAGCTAGAAAAGAAGCCGCGGCTGTCATGTTTGGTGCCATCGATGAGTTATTTGCTAAGACCTTTGTTAAGCCTAAAGACATTGGCATTCTGATTGTGAATTGCAGCCTATTCAATCCAACTCCATCACTGTCTGCAATGATTGTCAATCAGTACAAACTTCGAGGGAACATAAAGAGCTACAATCTAGGTGGGATGGGTTGCAGTGCAGGGTTGATCTCAATTGATCTTGCTAAAGATCTACTCCAAGCTCATCCCAACTCATACGCATTGATCATCAGCATGGAGAATATCACACTGAATTGGTATTTTGGAAACGACCGGTCAAAGCTTGTTTCAAACTGTTTATTTCGTATGGGTGGAGCTGCAATTCTGCTTTCCAACAAAAGCTGTGACAAAAGAAGATCCAAATACCGTTTGGTCACCACTGTTCGAACTAATAAGGCCGCTGATGACAAGTGTTTTAGCTGTGTTACTCAAGAAGAAGATGCCAATGGCAAAATTGGTGTTACTTTGTCGAAAGATCTCATGGCAGTTGCAGGTGATGCTTTAAAAACCAACATCACCACACTAGGGCCTCTCGTACTCCCAACATCTGAACAGCTTCTATTCTTCACCACATTAGTTGGGAAGAAACTTTTCAAGATGAAGATCAAACCTTATATTCCAGATTTCAAGCTTGCTTTCGAACATTTTTGCATCCATGCTGGAGGTAGAGCTGTTTTGGATGAATTAGAGAAGAACTTGCAGCTGTCTTCTTGGCATATGGAGCCATCAAGGATGACACTTTATCGATTCGGAAACACCTCCAGCAGTTCACTTTGGTATGAATTGGCTTACACAGAAGCCAAAGGGAGGATCAAGAAGGGGGATAGAATGTGGCAAATAGCATTTGGTTCTGGATTCAAGTGTAATAGTGCAGTGTGGAAGGCTCTCAAGACCATCAATGTTGCTAAGGAGAAGAGTCCTTGGATGGACGAAATCGACCAGTTTCCTGTTGATGTCCCAAGGGTGTCTGCAATATAA 1533 0.426 MTDTRPDTPLMPQSSRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVVLIFAQLSTFSLQDIYDLWEHLQYNLVSVILCSALLVFLSTLYFMTRPRPVYLVNFSCYKPEESHKCTKRIFMDHSRMAGSFSDENLEFQRKILERSGLGDSTYLPEAVLNIPPNPSMKEARKEAAAVMFGAIDELFAKTFVKPKDIGILIVNCSLFNPTPSLSAMIVNQYKLRGNIKSYNLGGMGCSAGLISIDLAKDLLQAHPNSYALIISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNKSCDKRRSKYRLVTTVRTNKAADDKCFSCVTQEEDANGKIGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFTTLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSSWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRMWQIAFGSGFKCNSAVWKALKTINVAKEKSPWMDEIDQFPVDVPRVSAI* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0197 510 CDD CHS_like 83 478 - -
Lan1g0197 510 PANTHER 3-KETOACYL-COA SYNTHASE 4 509 - -
Lan1g0197 510 PANTHER 3-KETOACYL-COA SYNTHASE 4 509 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lan1g0197 510 SUPERFAMILY Thiolase-like 286 481 IPR016039 GO:0016746
Lan1g0197 510 Gene3D - 106 480 IPR016039 GO:0016746
Lan1g0197 510 Pfam FAE1/Type III polyketide synthase-like protein 93 382 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lan1g0197 510 SUPERFAMILY Thiolase-like 87 304 IPR016039 GO:0016746
Lan1g0197 510 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 399 479 IPR013747 -
Lan1g0197 510 PIRSF Very_long_ch_3-ktacl-CoA_syn 20 510 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0197 Lan-Chr1 1450167 1453000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0197 3 510 Miscellaneous Gene Families AT2G26640 82.874 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0197 K15397 - gmx:100817884 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0197 1 1450167 1453000 Lan1g0197 1 1450167 1453000 ECH
Lan12g1191 12 18055125 18057592 Lan1g0197 1 1450167 1453000 LSH
Lan1g0197 1 1450167 1453000 Lan15g0373 15 7079300 7082160 PCT