Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0101 ATGGCTGCAACTTCTTTGTGTTCATCAACCCTTCAATCTCAAATCAATGGACTCAACAACTATCTTCACAAAACTTCTCCTTTTCAACCCAGATCCCTCACTTTTTCCAGGAGGAAACTCTCAACCGTGGTGAAGGCTTCATCCCGTGTTGACAAGTTTTCAAAAAGTGATATCATTGTCTCTCCATCTATTCTTTCTGCTAACTTTTCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGCCGCTTTGTCCCAAATATTACAATCGGGCCTCTTGTGGTTGATGCATTGCGACCTGTGACAGATCTTCCTTTGGATGTGCACCTGATGATTGTAGAACCTGAACAGCGGGTGCCAGATTTTATCAAGGCAGGGGCTGACATAGTCAGTGTTCACGCTGAGCAATCTTCCACCATCCATTTGCATCGTACAGTTAATCAAGTGAAAAGCCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCCCTAAGTGCAATAGAATATATCCTTGATGTGGTTGATTTGGTCTTAATCATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAGAGCCAAGTCAAGAAAATTTCTGATTTGAGAAGGTTGTGCGTGGAGAAGGGAGTGAATCCGTGGATTGAAGTGGATGGTGGAGTTGGTCCAAACAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCTCTGGTTGCTGGTTCTGCTGTGTTCGGAGCTAAAGATTATGCTGAAGCCATAAGAGGAATCAAAACCAGCAAAAGACCCGAGCCAGTTGCCGTGTGA 846 0.448 MAATSLCSSTLQSQINGLNNYLHKTSPFQPRSLTFSRRKLSTVVKASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHAEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYILDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVGPNNAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEPVAV* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0101 281 Hamap Ribulose-phosphate 3-epimerase [rpe]. 57 273 IPR026019 GO:0004750|GO:0006098
Lan1g0101 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 87 101 IPR000056 GO:0005975|GO:0016857
Lan1g0101 281 PANTHER - 17 268 - -
Lan1g0101 281 Pfam Ribulose-phosphate 3 epimerase family 60 258 IPR000056 GO:0005975|GO:0016857
Lan1g0101 281 TIGRFAM rpe: ribulose-phosphate 3-epimerase 60 271 IPR026019 GO:0004750|GO:0006098
Lan1g0101 281 Gene3D Aldolase class I 48 277 IPR013785 -
Lan1g0101 281 SUPERFAMILY Ribulose-phoshate binding barrel 52 274 IPR011060 -
Lan1g0101 281 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 17 268 IPR000056 GO:0005975|GO:0016857
Lan1g0101 281 CDD RPE 59 271 IPR000056 GO:0005975|GO:0016857
Lan1g0101 281 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 191 213 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0101 Lan-Chr1 768390 773486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0101 K01783 - gmx:100817791 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1042 1 20696162 20697630 Lan1g0101 1 768390 773486 LSH