Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0630 ATGGGTGAGACTGGGAAACGGTACCGTTCACGTAGGGACTATGATGGTGACAACAAAAACCAAAAGAGACGTGCAAATGAGAGGGATGAAAACGGAAATGATGAATTGGTTGTTTATAGGATACTCTGTCCTGATGGAGTTATTGGGAATGTTATCGGTAAGAGCGGCAAAGTGATAAATTCCATACGGCAAGAGACTAGGGCAAGAGTCAAGGTTGTGGATCCATTTCCTGGCGCCAAGTACCGAGTTATAACGATCTATTGCTATGTCAAGGAGAAGGAAGAATTTGAGGTTGATGATGAGTTAAACCGGCCTCTATGTGCTGCTCAAGATGCTCTTCTCAAGGTTCATTCCGCCATTTCAAATGCTGTTGAATCGGTTGGAGATTCTGAGAAGAAGCGTAATGATAAGGAAGAATGTCAAATCCTTGTGCCATCAAGCCAGTCTGCAAATATCATTGGAAAGGCTGGGGCTACCATTAAAAAACTGAGAGTTAAGACAAAGACAAATATCAAGGTTATTCCGAAGGATGTAACTGACCCGACACACTCATGTGCTATGGAGTTTGACAATTTTCTATTGATTACTGGAGAATCAGAAGCAGTAAAAAGGGCATTATTTGCAGTTTCGTCTATTATGTACAAATTCTCTCCTAGGGAGAATATCCCTCTCGACCAAGCTATACCAGAAGGCCCTCCTAGCATCATCATTCCTACTGATGTCCCAATTTATCCACCTGGTGGAATATATCCAGCTCCGGATCCTATTATCCCACCTAGAACTGTTCCTCAAATCATTGGCGCTACAAATGTTCAAGATCTGCAAGGTTATGATGCAGGAAATACATGGCCTCTGTACTCATCTACCTTTCCAGTAGTTTCTGGTCTTGGTCCTCCACAATCTGAGGAGTTAATTGTAAGAATGTTGTGCCCCTCCGACAAGATTGGGCGTGTCATTGGGAAGGGAGGGAGTACAATTAGAAGTATGAGGGAGGCTAGTGGTGCTCGTATTGAGGTTGATGATTCCAAGGCTCATCAAGATGAGTGTTTAATCTCTATAATTGCATCAGAGTCATCAAGCGACCTGAAGTCCATGGCAGTTGAAGCTGTTCTACTGCTGCAAGGGAAGATAAATGATGAAGATGATAACACAGTTTCAATACGGCTCCTAGTTCCATCCAAAGTGATAGGGTGTATTATAGGGAAAAGTGGTTCAATCATTAATGAAATTAGGAAGAGAACTATGGCAGATGTTCGAATTTCAAGAAGCGATAAGCCTAAATACGCAGATGTCAATGATGAACTCGTTGAGCTGGTTGGTGGAGTTGATTGTGTGAGAGATGCACTAATTCAGATTGTCTTGAGACTGAGGGATGATGTATTGAAAGAACGGGACATTGGCCAAAAAACCCCTATGGGAGCTGAATCCTTGTACCCTGGTGGTTCTGTTTTTTCATTGCCATCTATGCTGCCTTCAGTTCCTCATGTCACTGCTCCCCTAGCTTATGATCAGAGGACCAAAAGTGGATCTGGCCTGGGCATGCTTTCTTCAAGCAGTCTTTATGGATATCGGTCTTTTCCGATGGGAGAAAATGATTATGGGTCTATGTCTTCCTACGCCCCCACACCTTATGGAGGTTTGCTTCCCCCATCAACTATGGAGATGTTGGTTCCTGCTAATGCTGTTGGCAAAGTGTTGGGTAAAGGAGGATCCAATATAGCAAATATCAGGAAGATTTCAGGAGCAATAGTAGAGATTTCCGACTCCAAATCTGGCCGGGGTGATCGTATTGCTCTTATATCTGGCACACCTGAACAAAAGCGTGCAGCTGAAAACCTGATTCAGGCATTTATAATGGCCACATGA 1866 0.4335 MGETGKRYRSRRDYDGDNKNQKRRANERDENGNDELVVYRILCPDGVIGNVIGKSGKVINSIRQETRARVKVVDPFPGAKYRVITIYCYVKEKEEFEVDDELNRPLCAAQDALLKVHSAISNAVESVGDSEKKRNDKEECQILVPSSQSANIIGKAGATIKKLRVKTKTNIKVIPKDVTDPTHSCAMEFDNFLLITGESEAVKRALFAVSSIMYKFSPRENIPLDQAIPEGPPSIIIPTDVPIYPPGGIYPAPDPIIPPRTVPQIIGATNVQDLQGYDAGNTWPLYSSTFPVVSGLGPPQSEELIVRMLCPSDKIGRVIGKGGSTIRSMREASGARIEVDDSKAHQDECLISIIASESSSDLKSMAVEAVLLLQGKINDEDDNTVSIRLLVPSKVIGCIIGKSGSIINEIRKRTMADVRISRSDKPKYADVNDELVELVGGVDCVRDALIQIVLRLRDDVLKERDIGQKTPMGAESLYPGGSVFSLPSMLPSVPHVTAPLAYDQRTKSGSGLGMLSSSSLYGYRSFPMGENDYGSMSSYAPTPYGGLLPPSTMEMLVPANAVGKVLGKGGSNIANIRKISGAIVEISDSKSGRGDRIALISGTPEQKRAAENLIQAFIMAT* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0630 621 MobiDBLite consensus disorder prediction 1 30 - -
Lan19g0630 621 ProSiteProfiles Type-1 KH domain profile. 36 86 - -
Lan19g0630 621 ProSiteProfiles Type-1 KH domain profile. 303 370 - -
Lan19g0630 621 CDD PCBP_like_KH 386 453 - -
Lan19g0630 621 ProSiteProfiles Type-1 KH domain profile. 550 614 - -
Lan19g0630 621 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 377 467 IPR036612 GO:0003723
Lan19g0630 621 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 296 358 IPR036612 GO:0003723
Lan19g0630 621 Pfam KH domain 39 88 IPR004088 GO:0003723
Lan19g0630 621 Pfam KH domain 552 615 IPR004088 GO:0003723
Lan19g0630 621 Pfam KH domain 387 452 IPR004088 GO:0003723
Lan19g0630 621 Pfam KH domain 140 209 IPR004088 GO:0003723
Lan19g0630 621 Pfam KH domain 306 358 IPR004088 GO:0003723
Lan19g0630 621 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 31 89 IPR036612 GO:0003723
Lan19g0630 621 CDD PCBP_like_KH 306 350 - -
Lan19g0630 621 CDD PCBP_like_KH 139 210 - -
Lan19g0630 621 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 516 - -
Lan19g0630 621 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 548 602 - -
Lan19g0630 621 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 543 618 IPR036612 GO:0003723
Lan19g0630 621 ProSiteProfiles Type-1 KH domain profile. 137 209 - -
Lan19g0630 621 Gene3D K Homology domain, type 1 299 381 IPR036612 GO:0003723
Lan19g0630 621 Gene3D K Homology domain, type 1 382 459 IPR036612 GO:0003723
Lan19g0630 621 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 133 218 IPR036612 GO:0003723
Lan19g0630 621 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 548 602 - -
Lan19g0630 621 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 3 516 - -
Lan19g0630 621 SMART kh_6 549 619 IPR004087 GO:0003676
Lan19g0630 621 SMART kh_6 302 372 IPR004087 GO:0003676
Lan19g0630 621 SMART kh_6 136 214 IPR004087 GO:0003676
Lan19g0630 621 SMART kh_6 383 457 IPR004087 GO:0003676
Lan19g0630 621 SMART kh_6 35 103 IPR004087 GO:0003676
Lan19g0630 621 CDD KH-I 552 615 - -
Lan19g0630 621 ProSiteProfiles Type-1 KH domain profile. 384 452 - -
Lan19g0630 621 CDD PCBP_like_KH 38 117 - -
Lan19g0630 621 Gene3D - 36 221 - -
Lan19g0630 621 Gene3D K Homology domain, type 1 547 620 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0630 Lan-Chr19 11866658 11873318 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0630 K21444 - gmx:100801062 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0088 4 1214574 1216020 Lan19g0630 19 11866658 11873318 LSH