Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0542 ATGGCATCAAACTCCATGGCTGGCTTCATCACTGGTTCTCATTCTCATATCTCACATGATTCTGATGAGCATCAGCCTCCAACCCTTCAACCTTCATCCAAAGAATGTAGAGTTTGTGGTGATGAAATTGGATATAAGGAAGATGGGGTTCTATTTGTGGCTTGCCATGTATGTGCATTTCCTGTGTGTAAACCTTGTTATGAGTATGAGAGGAGTGAAGGGAACCAACTTTGTCCTCAATGCAACACTCGCTATAAGCGTCAGAAAGGTTGTCCTAGAGTGGCTGGAGATGAAGAGGAGAACTTTGATGATGATGATTTTGAGGACGAATTTCAGATTAAGAATCATCATGATGATGATGTAGACCGGGAACATGATGTTAATCATGTGGAAAATGGAGACTATAATCAACAGAAGTTGCATACTGGTCTAGCTTTCTCTTCAGCTGGAAGTGTGGCTGGCAAGGATTTGGAAGGTGACAGAGATTTCTACAGTAATGCAGAATGGGAAGAAAGAGTAGAGAAATGGAAAGTAAGGCAAGAAAAGAGAGGATTGCTAAACAAAGAGGACGGAAAAGAAGATCAAGGTGAAGATGATGATTACCTTTTGGCTGAAGCTAGGCAACCATTGTGGCGAAAGGTCCCAATAGCTTCAAGCCTAATCAATCCATACCGCATAGTCATTATCATGAGGCTTGTTATTCTAGCTTTCTTCTTCCGGTTCCGTATCTTAACTCCAGCATATGATGCATATCCCTTGTGGCTTATCTCTGTGATATGTGAGATATGGTTTGCACTATCATGGATACTTGATCAGTTCCCTAAGTGGCTGCCCATCACACGTGAAACATACCTGGACCGCTTGTCCATAAGGTTTGAGCGGGAAGGGGAGCCAAATCAACTAAGCCCTGTTGATGTCTTTGTGAGTTCTGTGGATCCTTTGAAGGAACCACCTATTATAACAGCAAACACTGTTCTATCAATCCTCTCTTTGGACTATCCTGTTGAGAAGGTCTGCTGCTATGTGTCGGACGATGGTGCATCTATGCTTCTGTTTGATTCATTGGCAGAAACTGCTGAATTTGCAAGAAGATGGGTTCCCTTTACCAAGAAGTATAACATAGAGCCAAGAGCACCTGAGTATTATTTCTCTCAGAAAATTGATTACTTGAAGGATAAGGTTCAGCCTACATTTGTTAAGGAGAGAAGGGCCATGAAGAGAGAATATGAAGAGTTTAAAGTGAAAATTAATGCATTGGTGGCAAAGGCCCTGAAGAAGCCAGAGGAGGGGTGGGTGATGCAGGATGGAACACCATGGCCTGGGAATAACACTCGTGATCATCCAGGAATGATTCAGGTATATTTGGGAAATGCTGGTGCACTAGATGTGGAAGGCAAGGAACTGCCCCGACTTGTGTATATTTCACGTGAAAAGCGTCCTGGCTATCCCCACCACAAGAAAGCTGGTGCCATGAATGCCTTGGTTCGAGTTTCTGCTGTGCTTACTAATGCACCTTTCATGTTGAATCTGGATTGTGATCACTACATCAATAATAGCAAGGCAATCAGAGAGGCTATGTGCTTTTTAATGGACCCTCAGCTTGGGAAGAAGCTGTGTTATGTCCAATTTCCACAAAGATTCGATGGTATTGATCGTCACGATAGATATGCTAATCGCAACACTGTATTCTTTGATATCAATATGAAAGGGCTTGATGGAATTCAAGGTCCAGTATATGTTGGTACTGGAACCGTGTTCAACAGACAGGCATTATATGGCTATGATCCACCAGTATCCGAGAAAAGGCCAAAGATGACATGTGACTGCTGGCCAACATGGTGTTGCTTTTGTTGTGGTGGTTCAAGGAAGTCCAAGGCAAAAAAGAAATCAGGAAAAAGGGGTATATTCGGTGCATTGTACTCCAAGAAGAAGAAAATGATGGGTAAAGATTATGTTAGAAAAGGGTCTGGGGCAATGTTCGATCTTGAAGAGATTGAAGAAGGGCTTGAAGGCTATGAGGACCTAGAGAAATCATCTCTGATGTCCCAGAAAAATTTTGAAAAGCGATTTGGGCAGTCACCAGTTTTCATTGCTTCCACTTTAGTGGAAAATGGAGGACTTCCTGAAGGCACCAATACTCAATCATTGGTTAAGGAGGCCATTCATGTCATAAGCTGTGGCTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGGTGGATTTACGGCTCAGTCACAGAAGATATTTTGACTGGATTTAAGATGCACTGCAGAGGATGGAAATCAGTATATTGCATGCCAAAGAGACCTGCTTTTAAGGGATCTGCCCCAATAAATCTATCAGATAGATTGCACCAAGTTCTGAGATGGGCTCTTGGTTCGGTTGAAATTTTCCTTAGTCGCCATTGCCCGTTGTGGTATGGCTATGGTGGGAAACTTAAGTACCTAGAGAGGCTAGCTTACACTAATACCATAGTTTATCCATTCACTTCCATCCCTCTAATTGCATACTGCACAATTCCAGCTGTGTGTCTCTTGACCGGAAAGTTCATCATCCCCACACTGACAAACCTTGCTAGTGTTTGGTTTATGGCTCTATTCATATCCATCATTTTAACTGGCGTGCTTGAGCTTCGGTGGAGTGGGGTTACCATCGAAGACTGGTGGCGCAATGAGCAATTCTGGGTCATCGGAGGTGTTTCTGCGCACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTAGCTGGAGTAGACACCAATTTCACAGTCACAGCAAAAGCAGCAGATGATGCTGAATTTGGAGAGCTCTATCTCTTCAAGTGGACTACCCTTCTGATCCCACCAACCACTCTTATAATCTTGAACATTGTCGGAGTTGTGGCTGGAGTCTCTGGTGCCATTAACAATGGATCTGGTTCATGGGGACCTTTATTTGGGAAGCTATTCTTTGCCTTCTGGGTCATTGTTCACTTGTATCCTTTCCTCAAAGGTCTCATGGGAAAGCAAAACAGGACTCCTACTATTGTAGTCCTTTGGTCAATTCTTCTAGCATCAATTTTCTCATTGATTTGGGTCAGGATTGATCCCTTCTTGCCCAAGCAAACTGGTCCAATACTCAAACAATGTGGAGTAGAATGCTAA 3144 0.431 MASNSMAGFITGSHSHISHDSDEHQPPTLQPSSKECRVCGDEIGYKEDGVLFVACHVCAFPVCKPCYEYERSEGNQLCPQCNTRYKRQKGCPRVAGDEEENFDDDDFEDEFQIKNHHDDDVDREHDVNHVENGDYNQQKLHTGLAFSSAGSVAGKDLEGDRDFYSNAEWEERVEKWKVRQEKRGLLNKEDGKEDQGEDDDYLLAEARQPLWRKVPIASSLINPYRIVIIMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWLPITRETYLDRLSIRFEREGEPNQLSPVDVFVSSVDPLKEPPIITANTVLSILSLDYPVEKVCCYVSDDGASMLLFDSLAETAEFARRWVPFTKKYNIEPRAPEYYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINALVAKALKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGNAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPTWCCFCCGGSRKSKAKKKSGKRGIFGALYSKKKKMMGKDYVRKGSGAMFDLEEIEEGLEGYEDLEKSSLMSQKNFEKRFGQSPVFIASTLVENGGLPEGTNTQSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLIAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVTIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDAEFGELYLFKWTTLLIPPTTLIILNIVGVVAGVSGAINNGSGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0542 1047 SUPERFAMILY RING/U-box 20 107 - -
Lan19g0542 1047 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 164 1047 - -
Lan19g0542 1047 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 25 120 - -
Lan19g0542 1047 CDD mRING-HC-C4C4_CesA_plant 36 84 - -
Lan19g0542 1047 MobiDBLite consensus disorder prediction 1 15 - -
Lan19g0542 1047 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 25 120 - -
Lan19g0542 1047 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 164 1047 - -
Lan19g0542 1047 Pfam Zinc-binding RING-finger 32 101 IPR027934 -
Lan19g0542 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 109 IPR013083 -
Lan19g0542 1047 MobiDBLite consensus disorder prediction 1 32 - -
Lan19g0542 1047 Pfam Cellulose synthase 304 1040 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lan19g0542 1047 Coils Coil 402 422 - -
Lan19g0542 1047 SUPERFAMILY Nucleotide-diphospho-sugar transferases 318 855 IPR029044 -
Lan19g0542 1047 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 409 603 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0542 Lan-Chr19 8797961 8804307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0542 34 1047 Glycosyltransferase AT5G05170 65.201 0.0 1422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0542 K10999 - gmx:100781996 1899.02