Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0492 ATGGATGATTCAACGGAGGGTGAGTTATACGACGGCGTTCGATCTCAATTCCCTCTTTCCTTTGGTAAGCAATCCAAATCTCATACCCCACTCGAAGCAATTCACAACGCCACTCGTCGTAACATTTCTCTCTCTTCCGTAAACCCTACCCCACCCCCTCCACCGCCACATGGATCCATTGATGATGATGATGATGATGACGGTGAGATGATTGGCCCGCCACCACCGCCCCCTGCCGCCAATTTGACCTCTGACGAAGACGAAGAAGAAGAAGATTCGGATGAAGACGAGGTTGGGAAACGGTTTCGGATTCCGATTACTAATGAGATTGTCCTCAAGGGCCATACCAAGGTTGTGTCAGCTCTTGCTGTGGATCACACTGGTTCCAGAGTACTTTCTGGAAGTTACGACTATACAGTACGTATGTATGACTTTCAAGGAATGAATTCTCGATTGCAATCATTTCGACAACTGGAGCCATCTGAAGGTCATCAAGTTCGCCATCTAAGTTGGAGTCCCTCTGCTGATCGCTTTTTGTGTGTGACTGGATCAGCTCAGGCAAAGATTTATGATCGTGATGGGCTTACTCTGGGAGAGTTTATGAAGGGAGATATGTATATTCGTGATTTAAAGAATACCAAGGGCCACATAACTGGATTGACATGTGGAGAGTGGCATCCAAAAAACAAAGAAACAATTTTAACATCATCAGAGGATGGGTCACTACGCATATGGGATGTAAATGACTTCAAAAGTCAGAAACAGGTCATTAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACTTGCGCATGGGATCGGGATGGTAAATGCATTGCTGGCGGTATAGGAGATGGTTCTATACAGGTTTGGAACATTAAGCCTGGATGGGGGAGTAGACCAGATGTGCATATTGAAAAAAGCCATTCGGATGATATTACTGCTCTGAAATTTTCTAGTGATGGGAGGTTGTTATTATCAAGAAGCTTTGATGGTTCGTTGAAGGTTTGGGATTTGCGCAAAGCAAAGGAAGCTTTGAAGGTATTTGAGGATCTTCCAAATAACTATGGTCAAACAAATATTACCTTCAGTCCTGATGAGCAACTCTTTTTGACTGGAACATCTGTTGAAAGGGAGAGCTCGACTGGAGGTTTATTGTGCTTCTTTGATAGAGTAAACCTTGAGCTTGTTTCAAGAGTCGGCATATCCCCCACGTGTAGCGTTGTTCAGTGCTCTTGGCACCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACGTACTATATGATCCAACCCTCAGTGAAAGAGGAGCTCTTGTTTGTGTTGCTCGTGCACCCAGGAAAAAATCAATTGATGATTTTGAGGCAAAACCAGTTATTCACAATCCTCACTCCTTACCACTATTTAGAGATCAGCCAAGCCGGAAGCGTCAGCGAGAGAAGATACTAAAGGATCCAATGAAGTCCCATAAGCCTGAGCTTCCCATGACAGGACCTGGCTTTGGTGGGCGAGTTGGCACAACTCAAGGAAGCTTACTGACCCAGTATCTCATGAAGCAAGGGGGTATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGTTGCAGCAAAGGAGCCGAAGTTCATTGCTCCGGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCGAAATCGGATTCCGAGGATGAAGAGAAATGA 1752 0.4515 MDDSTEGELYDGVRSQFPLSFGKQSKSHTPLEAIHNATRRNISLSSVNPTPPPPPPHGSIDDDDDDDGEMIGPPPPPPAANLTSDEDEEEEDSDEDEVGKRFRIPITNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRHLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFMKGDMYIRDLKNTKGHITGLTCGEWHPKNKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQVWNIKPGWGSRPDVHIEKSHSDDITALKFSSDGRLLLSRSFDGSLKVWDLRKAKEALKVFEDLPNNYGQTNITFSPDEQLFLTGTSVERESSTGGLLCFFDRVNLELVSRVGISPTCSVVQCSWHPKLNQIFATVGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHSLPLFRDQPSRKRQREKILKDPMKSHKPELPMTGPGFGGRVGTTQGSLLTQYLMKQGGMIKETWMEEDPREAILKYADVAAKEPKFIAPAYAETQPEPVFAKSDSEDEEK* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0492 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 255 IPR001680 GO:0005515
Lan19g0492 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 112 153 IPR001680 GO:0005515
Lan19g0492 583 ProSitePatterns Trp-Asp (WD) repeats signature. 233 247 IPR019775 -
Lan19g0492 583 MobiDBLite consensus disorder prediction 561 583 - -
Lan19g0492 583 MobiDBLite consensus disorder prediction 1 101 - -
Lan19g0492 583 CDD WD40 111 430 - -
Lan19g0492 583 Gene3D - 198 442 IPR015943 GO:0005515
Lan19g0492 583 Gene3D - 63 197 IPR015943 GO:0005515
Lan19g0492 583 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Lan19g0492 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 248 - -
Lan19g0492 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 112 146 - -
Lan19g0492 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 349 IPR001680 GO:0005515
Lan19g0492 583 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Lan19g0492 583 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Lan19g0492 583 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Lan19g0492 583 SMART WD40_4 105 144 IPR001680 GO:0005515
Lan19g0492 583 SMART WD40_4 301 340 IPR001680 GO:0005515
Lan19g0492 583 SMART WD40_4 203 246 IPR001680 GO:0005515
Lan19g0492 583 SMART WD40_4 151 191 IPR001680 GO:0005515
Lan19g0492 583 SMART WD40_4 250 294 IPR001680 GO:0005515
Lan19g0492 583 Pfam WD domain, G-beta repeat 211 246 IPR001680 GO:0005515
Lan19g0492 583 Pfam WD domain, G-beta repeat 268 294 IPR001680 GO:0005515
Lan19g0492 583 Pfam WD domain, G-beta repeat 110 144 IPR001680 GO:0005515
Lan19g0492 583 Pfam WD domain, G-beta repeat 307 340 IPR001680 GO:0005515
Lan19g0492 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 342 - -
Lan19g0492 583 MobiDBLite consensus disorder prediction 18 46 - -
Lan19g0492 583 SUPERFAMILY WD40 repeat-like 83 428 IPR036322 GO:0005515
Lan19g0492 583 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 18 583 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0492 233 413 Miscellaneous Gene Families AT5G08390 24.176 2.24e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0492 K24752 - gmx:100815380 960.674