Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0419 ATGAGTTCATCCTCAGGTCAAAGCAGTGGCTATGATCTTTCTTTTAAGATCTTGTTGATTGGTGATTCTGCTGTTGGAAAAAGTAGCTTACTTGTAAGCTTCATTTCCAACCCTGTTGAAGATCTTGCACCTACCATTGGTGTTGATTTTAAGATCAAAACATTCACAGTAGGTGGGAAGAGATTAAAACTAACAATCTGGGACACTGCTGGGCAAGAAAGATTCAGGACTCTAACAAGTTCTTACTATAGAGGAGCACAAGGAATCATTCTTGTTTATGATGTCACAAGGAGAGAAACCTTTACAAACTTATCAGAAGTTTGGTCTAAAGAATTGGAACTATATTCAACTAATCAAGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGACAAAGATTCTGAAAGGGCTGTTAGCAGAGAAGAGGGTTTAGCTCTTGCTGAAGAGTTGGGGTGTTTGCTTTTCGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGCGTTGCTTTGAGGAACTTGGTCTAAAGATAATGGAAGCTCCTAGTCTTTTGGAAGAAGGATCAACAGCAGCAGTTAAAAGGAATGTTTTAAAGCAGAAACATGAACCTCATTCATCCCAAAATGGTGGTTGTTGCTCTTAA 639 0.385 MSSSSGQSSGYDLSFKILLIGDSAVGKSSLLVSFISNPVEDLAPTIGVDFKIKTFTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSEVWSKELELYSTNQDCVKMLVGNKVDKDSERAVSREEGLALAEELGCLLFECSAKTRENVERCFEELGLKIMEAPSLLEEGSTAAVKRNVLKQKHEPHSSQNGGCCS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0419 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 198 IPR027417 -
Lan19g0419 212 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Lan19g0419 212 SMART rab_sub_5 15 179 - -
Lan19g0419 212 CDD Rab18 15 176 - -
Lan19g0419 212 SMART ran_sub_2 20 211 - -
Lan19g0419 212 TIGRFAM small_GTP: small GTP-binding protein domain 15 170 IPR005225 GO:0005525
Lan19g0419 212 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Lan19g0419 212 PRINTS Transforming protein P21 ras signature 15 36 - -
Lan19g0419 212 PRINTS Transforming protein P21 ras signature 37 53 - -
Lan19g0419 212 PRINTS Transforming protein P21 ras signature 55 77 - -
Lan19g0419 212 PRINTS Transforming protein P21 ras signature 119 132 - -
Lan19g0419 212 PRINTS Transforming protein P21 ras signature 154 176 - -
Lan19g0419 212 Gene3D - 8 211 IPR027417 -
Lan19g0419 212 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 212 - -
Lan19g0419 212 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Lan19g0419 212 SMART ras_sub_4 12 179 - -
Lan19g0419 212 SMART rho_sub_3 17 179 IPR001806 GO:0003924|GO:0005525
Lan19g0419 212 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Lan19g0419 212 PANTHER DRAB5-RELATED 1 212 - -
Lan19g0419 212 SMART arf_sub_2 5 180 - -
Lan19g0419 212 ProSiteProfiles small GTPase Ras family profile. 6 212 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0419 Lan-Chr19 5516933 5520970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0419 9 169 EF-hand Containing Proteins AT5G27540 28.402 1.51e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0419 K07910 - gmx:100818801 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0407 9 5910010 5912769 Lan19g0419 19 5516933 5520970 LSH
Lan19g0419 19 5516933 5520970 Lan11g1443 11 23634518 23638708 PCT
Lan11g1443 11 23634518 23638708 Lan19g0419 19 5516933 5520970 PCT