Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0378 ATGGGTTTGAAGAAATTCCTAAAACCAATATCAAAAGCACACCTTGATTACCATCCCTTACCACCACTTTCTCCAATCCCAAACCCACCACTTCCAACTCCACCACCACACACTTCACCTCTTCCACCATCTCCTCCCACTCTCACCCTCTCTCCCATCCCTCACCACCACTTCCACCACCTCCAACTCTTCCTCAAAACCCATCTCTCTCCTCCCTTCACCCCTCTCTCCCTCCTCCACTTCCTCAAATCCAAACTCCACCACCACCCTTCTTTCTCACACTATGACTTTCATATCTTCAATTGGGCATCAAAAATTGATTCTTTTCGCCACACCCATCTCACTTTTCATTGGATGGCACAGAGTCTCTCCATAACGCACCGTTTTGATCAACTTAGAACCCTCATTGAGTTCATTGCATCAAATCCGTGTCCATGTTCTGATGGTACTATATTCTCTTGCCCACAAATTGAACCTATTTTTAGGTTTTCGATTCATGGGTATTGTAAAGTTGGGAACTTTGATGATGCCCTTTACGCGTTTCGGACAATGTGTAGGTTGATTGATGGGAGGCCTAGTGTTGAGGTTTGTAATATTTTGCTTCATGGGTTTGTGAAATGTGGGAGGTTTGATAGGGCTTTGGAGTTTTATAATGATGAGATGGTTAGATATAGGGTTAAGCCTGATGTAGTTAGTTTTAATATTTTGATTAGTGGCTATTGTCGGAATTCACGGTTTGAGTCTGCTTTAGAGATGTTTAAGGAGATGAGGGAAATGGGGTGTGATCCGAATGTGGTTACTTTTAATACATTGATTAAGGGGTTGTTTAGAGAGGGGAAGGTTGAGGAAGGGATTGGGATGGTAAATGAGATGATTGAGTTGGGATACCGGATTTCGGATGTGACTTGTGAGATTTTGGTGCATGGTCTTTGTAAGGAAGGAAGGGTTTTGCAAGCGTGTGAGATGTTGGTGGAGTTGTCGAAAAGGGGAGTTTTGCCAAAAGGGTATGATTATTTTGGTTTGATGGAAGTTTTGTGTAGAGAAGGAAATGTTGTTAGAGCATTGGAGCTTATTTATCAGTTATGGGACCGAGGAAGTGTTCCGAGCTTGATTGCTTGTACTGTGATGGTTGATGGTTTAAGTAGATCGGGGAAGAGTGAAGAAGCTTTGAGGTTGGTGGAAAAGATGGTTAAAGAGGGTATGGTACTGGATATTGTGACTTTCAATTGTGTCCTCCAAGATATTTGCAATGTGGGAAGAACAGAAGAAGCAAATAAATTGAGATTACTTGCTTCAAGCAAGGGTTTGGAACCAGATGCCATGACATATAAAATTTTAGTGACTGGGTATACAGAAGAGGGCAATCAAAAGGAGGGAGAGTTAGTGGTAGATGAGATGTTGGATAGGGGATTCATACCTGATCTTGCTTCATATAATAAATTGATGAATGGATTATCTAATTGCCGACGCTCTACTCTTAAAGCCAACAAATTTGGTTGCTGA 1503 0.4192 MGLKKFLKPISKAHLDYHPLPPLSPIPNPPLPTPPPHTSPLPPSPPTLTLSPIPHHHFHHLQLFLKTHLSPPFTPLSLLHFLKSKLHHHPSFSHYDFHIFNWASKIDSFRHTHLTFHWMAQSLSITHRFDQLRTLIEFIASNPCPCSDGTIFSCPQIEPIFRFSIHGYCKVGNFDDALYAFRTMCRLIDGRPSVEVCNILLHGFVKCGRFDRALEFYNDEMVRYRVKPDVVSFNILISGYCRNSRFESALEMFKEMREMGCDPNVVTFNTLIKGLFREGKVEEGIGMVNEMIELGYRISDVTCEILVHGLCKEGRVLQACEMLVELSKRGVLPKGYDYFGLMEVLCREGNVVRALELIYQLWDRGSVPSLIACTVMVDGLSRSGKSEEALRLVEKMVKEGMVLDIVTFNCVLQDICNVGRTEEANKLRLLASSKGLEPDAMTYKILVTGYTEEGNQKEGELVVDEMLDRGFIPDLASYNKLMNGLSNCRRSTLKANKFGC* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0378 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Lan19g0378 500 Pfam PPR repeat 341 365 IPR002885 -
Lan19g0378 500 Pfam PPR repeat 165 186 IPR002885 -
Lan19g0378 500 Pfam PPR repeat 301 331 IPR002885 -
Lan19g0378 500 Pfam PPR repeat 196 218 IPR002885 -
Lan19g0378 500 TIGRFAM PPR: pentatricopeptide repeat domain 196 230 IPR002885 -
Lan19g0378 500 TIGRFAM PPR: pentatricopeptide repeat domain 442 474 IPR002885 -
Lan19g0378 500 TIGRFAM PPR: pentatricopeptide repeat domain 266 298 IPR002885 -
Lan19g0378 500 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Lan19g0378 500 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Lan19g0378 500 TIGRFAM PPR: pentatricopeptide repeat domain 301 333 IPR002885 -
Lan19g0378 500 TIGRFAM PPR: pentatricopeptide repeat domain 165 186 IPR002885 -
Lan19g0378 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Lan19g0378 500 SUPERFAMILY HCP-like 166 360 - -
Lan19g0378 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Lan19g0378 500 Pfam Pentatricopeptide repeat domain 433 483 IPR002885 -
Lan19g0378 500 Gene3D Tetratricopeptide repeat domain 429 497 IPR011990 GO:0005515
Lan19g0378 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Lan19g0378 500 Pfam PPR repeat family 228 275 IPR002885 -
Lan19g0378 500 Pfam PPR repeat family 368 417 IPR002885 -
Lan19g0378 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Lan19g0378 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 228 IPR002885 -
Lan19g0378 500 PANTHER ATPASE EXPRESSION PROTEIN 3 29 490 - -
Lan19g0378 500 MobiDBLite consensus disorder prediction 25 46 - -
Lan19g0378 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Lan19g0378 500 Gene3D Tetratricopeptide repeat domain 76 220 IPR011990 GO:0005515
Lan19g0378 500 Gene3D Tetratricopeptide repeat domain 221 314 IPR011990 GO:0005515
Lan19g0378 500 Gene3D Tetratricopeptide repeat domain 315 428 IPR011990 GO:0005515
Lan19g0378 500 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 29 490 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0378 58 491 Miscellaneous Gene Families AT4G11690 28.256 1.65e-46 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0378 - - aprc:113860936 650.973