Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0248 ATGGCTCTAATGGCTTCTTCAAGAACCAAGCTAGTCACTATTATTACTGAAGCTTCTTCCAAATGGAGAAATTATTGTTCCTCTTATTCCACTACTGCTGATGCTACTATTGAACTAGATAGCTTCTTTGGATTGAAGGATTATGTTGATTATAGAAGATCCATTTATGGTGAAATTACACATAAGGCCCTTCTTGTTGATGTTGTTGGTACCCTTCTCATACCTTCTCAACCCACGGCTCAGATATATAGGGAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAGGATGAGATATTGCATAGATATAGAAGAGCTTATAGTAAACCTTGGGGTAAATCTCGTCTCAGATATGTTAATGATGGCCGGCCCTTCTGGCAATATATAGTTAGTTATTCCACTGGCTGTTCAGATTCTCAGTATTTTGAAGAGGTTTATAACTACTATATAACAGACAAGGCATGGCATCTCTGCGATCCGGAATCTGAAGAAGTGTTTAGAGCTCTTAGAGAATCAGGTGTCAAGTTGGCCATAGTGTCAAATTTTGACACTAGATTAAGGCCTCTCTTGCAGGCATTAAACTGTGATAATTGGTTTGATGCAGTAGCAGTATCAGCTGAGGTTGCAGCAGAGAAGCCAAATCCAACTATATTTCTTAAAGCATGTGACATGTTGGGTGTGAAACCTGAGGATGCTGTTCATGTCGGGGATGATCGTAGAAATGATATATGGGGTGCCAGAGATGCTGGATGTGATGCTTGGCTCTGGGGAAGTGATGTTCACTCCTTTAAAGAGGTAGCTCAGAGGATTGGGGTTCAGGTCTGA 825 0.4109 MALMASSRTKLVTIITEASSKWRNYCSSYSTTADATIELDSFFGLKDYVDYRRSIYGEITHKALLVDVVGTLLIPSQPTAQIYREIGEKYGVEYSEDEILHRYRRAYSKPWGKSRLRYVNDGRPFWQYIVSYSTGCSDSQYFEEVYNYYITDKAWHLCDPESEEVFRALRESGVKLAIVSNFDTRLRPLLQALNCDNWFDAVAVSAEVAAEKPNPTIFLKACDMLGVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVAQRIGVQV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0248 274 SFLD Haloacid Dehalogenase 62 256 - -
Lan19g0248 274 Pfam Haloacid dehalogenase-like hydrolase 67 253 IPR041492 -
Lan19g0248 274 PANTHER - 34 274 - -
Lan19g0248 274 CDD HAD_dREG-2_like 162 273 - -
Lan19g0248 274 Gene3D - 66 258 IPR023214 -
Lan19g0248 274 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 34 274 - -
Lan19g0248 274 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 171 250 IPR006439 -
Lan19g0248 274 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 62 256 - -
Lan19g0248 274 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 152 252 IPR006439 -
Lan19g0248 274 Gene3D - 77 150 IPR044924 -
Lan19g0248 274 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 61 72 IPR006439 -
Lan19g0248 274 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 169 182 IPR006439 -
Lan19g0248 274 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 199 215 IPR006439 -
Lan19g0248 274 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 217 237 IPR006439 -
Lan19g0248 274 SUPERFAMILY HAD-like 62 265 IPR036412 -
Lan19g0248 274 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 62 255 IPR011949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0248 Lan-Chr19 2718749 2723433 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0248 - - zju:107435874 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0972 5 22920467 22924454 Lan19g0248 19 2718749 2723433 LSH
Lan9g0441 9 6698277 6700940 Lan19g0248 19 2718749 2723433 LSH
Lan5g1197 5 25940130 25942709 Lan19g0248 19 2718749 2723433 LSH