Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0203 ATGTCTTCCCCAAGTAAACGCCGAGACATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCGACGATGGAATGCAAGAATTCTTTGTTGAATTTCATGGCCCAAAAGACAGCCCTTATGAAGATGGTGTATGGAAGATAAGAGTGGAGTTACCTGATGGTTATCCTTATAAGTCTCCATCTATTGGTTTTGTCAACAAAATTTACCACCCTAATGTTGATGAAGTGTCTGGATCAGTTTGCTTGGATGTTATTAACCAAACTTGGAGTCCCATGTTTGACCTTGTTAATGTGTTCGAAGTGTTTCTTCCTCAACTTCTTCTGTACCCCAACGCATCAGATCCATTAAATGACGACGCTGCTGCTTTGATGATGCAAGATTCTGCTGCATATGAACAAAGAGTCAAAGAATATTGTCAAAAATATGCCAAGGCAGAAGATGTTGGAGCTACAAAGGAGGAAAGTTCAAGTGAGGAAGAACTGAGTGAAGAAGATTACTCCTCTAGTGATGATGATGATGATGCCATTGCTGGCAAACCTGATCCTTAG 561 0.4046 MSSPSKRRDMDLMKLMMSDYKVEMIDDGMQEFFVEFHGPKDSPYEDGVWKIRVELPDGYPYKSPSIGFVNKIYHPNVDEVSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNDDAAALMMQDSAAYEQRVKEYCQKYAKAEDVGATKEESSSEEELSEEDYSSSDDDDDAIAGKPDP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0203 186 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Lan18g0203 186 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Lan18g0203 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 186 - -
Lan18g0203 186 MobiDBLite consensus disorder prediction 161 175 - -
Lan18g0203 186 CDD UBCc 10 143 IPR000608 -
Lan18g0203 186 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Lan18g0203 186 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lan18g0203 186 SUPERFAMILY UBC-like 4 148 IPR016135 -
Lan18g0203 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA 3 186 - -
Lan18g0203 186 MobiDBLite consensus disorder prediction 150 186 - -
Lan18g0203 186 SMART ubc_7 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0203 Lan-Chr18 1958765 1962296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0203 3 117 Miscellaneous Gene Families AT3G17000 23.577 5.77e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0203 K10576 - gmx:100791133 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0203 18 1958765 1962296 Lan1g1406 1 23802142 23807944 LSH