Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0487 ATGCTAAAGGCAGAGCCAGTTTTGTTCAGAAGGAGTCCTTCAAGAAGGCGTATGTTGAGACCCGGTGTGGGTACCGATGATAGAGGTTGGACCCCACTTCATGTTTACGCTCGTAAAGGTGATCTCAAATTGGTAAAGAAGCTTCTTGACCAAGGCATGGATGTCAATGTGACTGCATGGGGTCCTAAATCAAAAGGGGTGACCCCTCTCCACCTTGCAGCTGAAGGTGGGCACCTTGAAGTGATGGATGAACTGCTTGAGCGAGGTGCCAACATTGATGCCAGAACCAAGGGTGCTTGTGGCTGGACACCACTCCATATTGCAGCTAAAGAAAGGAGGAGGGATGTTGTGAAATTCTTGGTAGAGAATGGAGCATTCTTGCCACCTGATATTAATGATAGCAGATTCAACCCTCCACTTCATTACTGCCCTGGACTTGAATGGGCGTACGAGGAGATGAAGCTACTTAAACAGCAAGACTTATCAGCGAGTGACACACCTTACACCTCTGAAAGTTAA 519 0.4759 MLKAEPVLFRRSPSRRRMLRPGVGTDDRGWTPLHVYARKGDLKLVKKLLDQGMDVNVTAWGPKSKGVTPLHLAAEGGHLEVMDELLERGANIDARTKGACGWTPLHIAAKERRRDVVKFLVENGAFLPPDINDSRFNPPLHYCPGLEWAYEEMKLLKQQDLSASDTPYTSES* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0487 172 ProSiteProfiles Ankyrin repeat region circular profile. 100 125 - -
Lan17g0487 172 ProSiteProfiles Ankyrin repeat region circular profile. 65 97 - -
Lan17g0487 172 SUPERFAMILY Ankyrin repeat 26 144 IPR036770 -
Lan17g0487 172 ProSiteProfiles Ankyrin repeat region circular profile. 28 57 - -
Lan17g0487 172 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 7 171 - -
Lan17g0487 172 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 7 171 - -
Lan17g0487 172 SMART ANK_2a 28 57 IPR002110 GO:0005515
Lan17g0487 172 SMART ANK_2a 65 94 IPR002110 GO:0005515
Lan17g0487 172 SMART ANK_2a 100 133 IPR002110 GO:0005515
Lan17g0487 172 Gene3D - 22 167 IPR036770 -
Lan17g0487 172 ProSiteProfiles Ankyrin repeat profile. 100 125 IPR002110 GO:0005515
Lan17g0487 172 ProSiteProfiles Ankyrin repeat profile. 28 60 IPR002110 GO:0005515
Lan17g0487 172 PRINTS Ankyrin repeat signature 66 81 IPR002110 GO:0005515
Lan17g0487 172 PRINTS Ankyrin repeat signature 116 130 IPR002110 GO:0005515
Lan17g0487 172 Pfam Ankyrin repeat 29 57 IPR002110 GO:0005515
Lan17g0487 172 ProSiteProfiles Ankyrin repeat profile. 65 97 IPR002110 GO:0005515
Lan17g0487 172 Pfam Ankyrin repeats (3 copies) 65 125 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0487 Lan-Chr17 3749984 3752441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0487 33 150 Acyl Lipid Metabolism Gene Families AT5G53470 33.898 2.18e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0487 - - aprc:113868977 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0487 17 3749984 3752441 Lan18g0829 18 13656923 13658734 LSH