Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1166 ATGGCGACTGAGCTCGACCCAGTAGAGCCACAATCACTGAAGAAGCTAAGTTTCAAGTCTCTCAAGCGTGCCCTTGATCTCTTTTCTCCGGTTCGCGCTCAACTTCCTCCCCCAGATGCTGAAAGCAAAAAAATACGCATTAACCATAAGTTAAGTGTAGAGTATGGTGGAATCAAAAGCACCACTAATCCGCCTCCTAGTCAAGTTAACTCTACGACACAGGATCGCAGTCAACAACCAGGGCCCTCTAATGCACTTGCTCTTCCAGGCTCAGGAGACTATAAGGATCCCCTGAAAGGAGGACCCCAAAATGCTTTGGTTGTTGGTCCAACAATACCATCAACAGCTCCGCATGATCCTGGTTTTACGAGCAAAAATACGATAGTTGCTTCTGGCTCTGGTTCATCTGAAAGGAATTTATCTACATCTGCTTTAATGGAACGAATGCCAAGTAAATGGCCACGTCCTGTATGGCATGCGCCATGGAAGAACTACAGGGTAATCAGTGGTCACTTAGGATGGGTGAGATCTGTCGCAGTTGATCACAGCAATACATGGTTTTGTACTGGTTCTGCAGATCGAACTATCAAGATATGGGACTTGGCAAGTGGTACACTAAAGCTCACACTAACAGGCCATATTGAACAAGTAAGAGGCCTTGCTGTTAGCAACAAACATACATACATGTTTTCTGCTGGTGATGATAAACAAGTCAAATGCTGGGATCTTGAACAGAATAAGGTTATTAGGTCGTATCATGGTCATCTAAGTGGTGTTTATTGCTTGGCTCTCCATCCTACAATTGACGTTTTACTGACTGGAGGACGTGATTCTGTTTGCCGGGTCTGGGATATACGTAGTAAAATGCAAATTCACGCTCTCTCTGGTCATGATAATACTGTTTGCTCTGTGTTTACGCGGCCAACGGATCCCCAAGTTGTTACTGGTTCTCATGACAGTACCATCAAAATGTGGGACCTTAGATATGGTAAAACAATGTTAACCCTTACAAACCATAAGAAATCTGTTCGAGCAATGGCTCCACATCCTAAAGAGCAAGCTTTTGCATCTGCATCAGCTGACAATATTAAGAAATTCAGCCTTCCAAAAGGAGAGTTTTGCCACAATATGCTTTCTCAACAGAAAACTATTATCAATGCAATGGCAGTCAACGAGGATGGTGTGATGGTTACCGGAGGTGACAATGGGAGTATGTGGTTTTGGGATTGGAAGAGCGGTCACAATTTCCAGCAATCCCAAACAATTGTACAGCCTGGTTCACTGGACAGTGAAGCTGGTATTTATGCTATAACCTACGATGCTACTGGTACGAGGCTTATAACCTGCGAAGCTGACAAGACTATAAAGATGTGGAAAGAAGATGAAAGTGCCACTCCAGAATCCTTCCCTCTTAATTTCAGGCCTCCTAAAGACATCCGGCGGTTCTAA 1449 0.441 MATELDPVEPQSLKKLSFKSLKRALDLFSPVRAQLPPPDAESKKIRINHKLSVEYGGIKSTTNPPPSQVNSTTQDRSQQPGPSNALALPGSGDYKDPLKGGPQNALVVGPTIPSTAPHDPGFTSKNTIVASGSGSSERNLSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAVDHSNTWFCTGSADRTIKIWDLASGTLKLTLTGHIEQVRGLAVSNKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDSTIKMWDLRYGKTMLTLTNHKKSVRAMAPHPKEQAFASASADNIKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYAITYDATGTRLITCEADKTIKMWKEDESATPESFPLNFRPPKDIRRF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 247 - -
Lan16g1166 482 MobiDBLite consensus disorder prediction 55 85 - -
Lan16g1166 482 SMART WD40_4 287 326 IPR001680 GO:0005515
Lan16g1166 482 SMART WD40_4 161 200 IPR001680 GO:0005515
Lan16g1166 482 SMART WD40_4 371 409 IPR001680 GO:0005515
Lan16g1166 482 SMART WD40_4 329 367 IPR001680 GO:0005515
Lan16g1166 482 SMART WD40_4 203 242 IPR001680 GO:0005515
Lan16g1166 482 SMART WD40_4 421 459 IPR001680 GO:0005515
Lan16g1166 482 SMART WD40_4 245 284 IPR001680 GO:0005515
Lan16g1166 482 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Lan16g1166 482 CDD WD40 164 459 - -
Lan16g1166 482 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 8 482 IPR045241 GO:0000398
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 204 - -
Lan16g1166 482 ProSitePatterns Trp-Asp (WD) repeats signature. 271 285 IPR019775 -
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 287 - -
Lan16g1166 482 PRINTS G protein beta WD-40 repeat signature 187 201 IPR020472 -
Lan16g1166 482 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Lan16g1166 482 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Lan16g1166 482 MobiDBLite consensus disorder prediction 55 138 - -
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Lan16g1166 482 SUPERFAMILY WD40 repeat-like 157 459 IPR036322 GO:0005515
Lan16g1166 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 328 - -
Lan16g1166 482 Pfam WD domain, G-beta repeat 291 326 IPR001680 GO:0005515
Lan16g1166 482 Pfam WD domain, G-beta repeat 247 284 IPR001680 GO:0005515
Lan16g1166 482 Pfam WD domain, G-beta repeat 430 459 IPR001680 GO:0005515
Lan16g1166 482 Pfam WD domain, G-beta repeat 207 242 IPR001680 GO:0005515
Lan16g1166 482 Pfam WD domain, G-beta repeat 163 200 IPR001680 GO:0005515
Lan16g1166 482 Gene3D - 147 481 IPR015943 GO:0005515
Lan16g1166 482 PANTHER BNAA01G27690D PROTEIN 8 482 - -
Lan16g1166 482 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1166 Lan-Chr16 18974853 18982016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1166 210 458 Miscellaneous Gene Families AT5G08390 21.912 1.31e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1166 K12862 - gmx:100775526 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0075 4 943435 952368 Lan16g1166 16 18974853 18982016 LSH