Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1160 ATGGGTAGCAGAGTAAAGGGACGCACCGTTATAGAAGTTGGAGCTGATGGGGTTGCAATCATCACTATCATCAACCCTCCTGTCAATTCTCTCTCCTTTGATGTATTGCGCAGTTTAAAGGAGAGTTTTGATCAGGCTTTACAGAGGAATGATGTCAAGGCAATTGTTGTCACAGGTGCCAAGGGAAAATTTTCTGGTGGTTTTGATATTACTGCATTTGGTGGACTTCAAGAGGGAAAAGAGAATTCAAATCCTGGTTCGATATCGATAGAAATAGTCACTGACACTGTAGAAGCGGCAAGGAAGCCTACAGTTGCTGCCATTGATGGCCTTGCCCTGGGTGGAGGGTTAGAGGTTGCAATGGCATGCACTGCACGGTTATCAACCCCTACTGCTCAACTAGGTTTGCCTGAACTTCAGCTTGGAATAATACCTGGATTTGGAGGAACACAACGACTTCCTCGTCTTGTTGGCCTGGCAAAGGCCCTTGAGATGATGCTGACCTCAAAGCCGGTTAAAGGGGAGGAAGCCTGTAATTTGGGGCTTGTAGATGCTGTAGTGTCATCAGATCAGTTGGTGAACACTGCACGTCAGTGGGCTCTGGATATCTTGGACCACCGACGACCATGGGTTGCTAGTCTTTACAAGAATGACAAAATAGAACCCCTTGGGGAAGCAAGAGAGATATTGAAATTTGCAAGAGCTCAGGCTCAAAAACGGGCTCCTAATCTCAAGCACCCATTGGTTTGCATTGATGTTATAGAAGAGGGAATAGTTTCTGGTCCCCGTGCAGGACTCTGGAAGGAGGCTGAAGCCTTCCAAGGACTGCTAAATTCAGATACTTCCAAGAGCTTGGTTCACATATTTTTCGCTCAACGAGGGACATCTAAGGTACCTGGGGTTACTGATCGTGGTTTGGTTCCAAGACCAGTGAAAAAGGTTGCCATCCTTGGTGGGGGACTAATGGGCTCTGGAATAGCGACTGCTTTAATTCTTGGTAACTATCCTGTCGTCTTGAAAGAAGTAAATGAGAAGTTCTTGGATGCAGGTCTTAATAGGGTTAAAGCAAATTTACAAAGTCGTGTCAAGAAAGGGCAATTGACTAAGGAAAGACTTGAAAAGACCATTTCTCTTCTTAAAGGTACCATTGACTATGAAAGTTTCAAAGATGTGGACATGGTGATAGAGGCTGTTATTGAGAAAGTTTCGTTAAAACAACAGATCTTTGCTGACCTTGAAAAGTATTGTCCACCCCATTGTATACTTGCAAGTAACACTTCCACAATCGACTTAAACCTCATTGGAGAGAAAACCAAGTCTCAAGACAGGATTATTGGAGCCCATTTCTTCAGCCCGGCACATATTATGCCACTTCTGGAAATTGTTCGTACTAAACAGACCTCTCCCCAAATAATAGTTGACTTGCTAGATATTGGAAAGAAGATAAAGAAAACTCCAGTGGTTGTTGGAAACTGTACCGGATTTGCTGTTAATAGGATGTTCTTCCCATATACTCAAGCAGCTATATTGCTTGTTGAACGTGGTACAGATGTTTATCAAATTGATAAGGCAATAACTAAATTTGGAATGCCCATGGGGCCATTCAGATTGGTTGACCTCGTCGGTTTTGGTGTGGGGGTTGCAAGTGCCATGCAATTTATTGAGAATTTTCCAGAGCGAACTTATAAATCGTTGCTTCTTCCACTTATGCAAGAGGATGATAGAGCTGGTGAAGCAACTCGCAAAGGGTTTTATTTGTATGACGATAAACGCAAGGCTAGCCCTGATCCTGAATTGAAGAATTATATTGAGAAGGCCAGGAGCATTTCTGGCGTCACTATTGATCCAAAGCTTGTAAAATTACCAGAAAAGGACATCATAGAGATGATCTTCCTTCCGGTGGTGAATGAGGCTTGCCGGGTCCTTGATGAAGGTATTGCAGTTAAAGCAGCTGATCTTGATATTTCAGCTGTCATGGGCATGGGTTTTCCACCTTACAGGGGAGGCATCATATTCTGGGCTGACTCTCTTGGATCCAAATACATATACTCAAGATTGGAGGAATGGTCAAAACTGTATGGAGAATTCTTCAAGCCTTGTGCCTATTTGGCTGCAAGAGCTGCCAAGGGGATCCCTCTGAGTGCATCTGTGGAGCAAGGGAAATCACGGTTATAA 2175 0.4382 MGSRVKGRTVIEVGADGVAIITIINPPVNSLSFDVLRSLKESFDQALQRNDVKAIVVTGAKGKFSGGFDITAFGGLQEGKENSNPGSISIEIVTDTVEAARKPTVAAIDGLALGGGLEVAMACTARLSTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLAKALEMMLTSKPVKGEEACNLGLVDAVVSSDQLVNTARQWALDILDHRRPWVASLYKNDKIEPLGEAREILKFARAQAQKRAPNLKHPLVCIDVIEEGIVSGPRAGLWKEAEAFQGLLNSDTSKSLVHIFFAQRGTSKVPGVTDRGLVPRPVKKVAILGGGLMGSGIATALILGNYPVVLKEVNEKFLDAGLNRVKANLQSRVKKGQLTKERLEKTISLLKGTIDYESFKDVDMVIEAVIEKVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGEKTKSQDRIIGAHFFSPAHIMPLLEIVRTKQTSPQIIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAILLVERGTDVYQIDKAITKFGMPMGPFRLVDLVGFGVGVASAMQFIENFPERTYKSLLLPLMQEDDRAGEATRKGFYLYDDKRKASPDPELKNYIEKARSISGVTIDPKLVKLPEKDIIEMIFLPVVNEACRVLDEGIAVKAADLDISAVMGMGFPPYRGGIIFWADSLGSKYIYSRLEEWSKLYGEFFKPCAYLAARAAKGIPLSASVEQGKSRL* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1160 724 Gene3D - 307 489 - -
Lan16g1160 724 Coils Coil 355 375 - -
Lan16g1160 724 Pfam 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 494 587 IPR006108 GO:0006631|GO:0016491|GO:0016616
Lan16g1160 724 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 623 710 IPR008927 -
Lan16g1160 724 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 313 491 IPR006176 GO:0006631|GO:0070403
Lan16g1160 724 Gene3D - 1 306 - -
Lan16g1160 724 SUPERFAMILY ClpP/crotonase 11 301 IPR029045 -
Lan16g1160 724 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 494 604 IPR008927 -
Lan16g1160 724 PANTHER 3-HYDROXYACYL-COA DEHYROGENASE 5 719 - -
Lan16g1160 724 CDD crotonase-like 16 203 - -
Lan16g1160 724 ProSitePatterns 3-hydroxyacyl-CoA dehydrogenase signature. 491 515 IPR006180 GO:0006631|GO:0016491|GO:0016616
Lan16g1160 724 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 310 492 IPR036291 -
Lan16g1160 724 Pfam Enoyl-CoA hydratase/isomerase 16 214 IPR001753 GO:0003824
Lan16g1160 724 PANTHER GLYOXYSOMAL FATTY ACID BETA-OXIDATION MFP-A PROTEIN 5 719 - -
Lan16g1160 724 Gene3D - 496 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1160 Lan-Chr16 18861786 18869728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1160 1 724 Acyl Lipid Metabolism Gene Families AT3G06860 77.379 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1160 K10527 - gmx:100777319 1256.12