Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1117 ATGGAGAATCAGAACAGTTTTCGGGCACCTACAATGGAAAAACAGCAAAGTTTTCGCAGGGTGATGGAAAAACAGAGGAGTTTTCGCGGTTTTATGGAAAAACAGAAAAGTTTTCGCATTGTGATGGAGAAGCAGCTCAGCTTTATCGGAAACGGTGAGAGGAAAAAGAGCAAGGAATCGCCTGGGAAACGCGGCGACTTACCGATTCATTTAGCAGCTCGGGCAGGGAACTTGAGTAGACTGAAAGAGATAATTCAAAACTGTGCTAGTGATGAGTTAAAGAATTTGTTGGCAAAGCAGAACCTGGAGGGGGAGACTCCTCTTTACGTCGCTTCAGAGAATGGACATGCCTCGGTTGTTGGCGAGATACTGAAGCATTTGGACTTGGAAACTGCTTCCATTGCGGCCAGAAATGGCTATGATCCATTCCATGTTGCAGCAAGGCAGGGTCATGTAGAGGTTCTGAGAGAATTGCTGCACTCCTTTCCGAACTTGGCTATGACCACAGATTTGGCCAATTCCACTGCTTTACATACAGCCGCAACTCAAGGTCATATCGATGTGGTCAATCTCCTTTTGGAATCCGATTCAAACCTTGCAAAAATAGCCAGGAACAACGGTAAGACTGTCCTTCATTCTGCGGCTAGAATGGGGCATTTGGAAGTTGTGAAAGCCTTACTAAATAAGGATCCGAGCACTGGATTTAGGACTGATAAGAAGGGTCAAACTGCACTACACATGGCTGTGAAAGGGCAAAATGAAGAAATTCTGCTGGAATTGGTAAAGCCCGACCCTACAGTTTTAAGTCTAGGGGATAATAAAGGAAACACAGCTTTGCATATTGCCACATCGAAGGGTCGTATTCAGAATGTGCGGTGCTTGTTAGCTATGGAGGGTATCAACATCAACATGACTAACAAGGCCGGAGAGACTCCTCTTGACATTGCAGAGAAATTTGGAACTCCAGAACTTGTCTCTATACTGAGGGTGGCCGGGGCTACCAATTCCACTGACCAAGCGAAACCTCCGAGTGCGACTAAGCAACTTAAGCAGACTGTCAGTGACATCAAGCATGATGTGCAATCCCAACTCCAACAGACTCGTCAGACGGGCATGAGGGTCCAGAAAATCGCGAAAAAGCTGAAAAAGCTCCACATTAGTGGCCTGAACAACGCGATAAATTCTGCTACAGTTGTCGCCGTTCTCATTGCTACGGTTGCTTTTGCAGCCATCTTCACAGTCCCTGGTCAATATGTACAGGAGAAAACACAGGGCTTATCACTTGGACAAGCAAACATAGCAAACAATGCAGCATTCCTAATATTTTTCGTGTTCGACAGCCTGGCATTATTCATTTCTCTCGCAGTAGTGGTGGTTCAAACTTCTGTAGTCGTGATCGAGCAAAAGGCGAAAAGGCAGCTCGTTTTTGTGATCAACAAGCTCATGTGGACAGCTTGCCTTTTTATTTCCATCGCCTTCATTTCACTCACCTATGTAGTGGTAGGACCACACTCTAAATGGCTTGCTATATATGCTACAGTGATCGGAAGCTTGATAATGGTTTCGACAATTGGCTCAATGGCCTATTGTGTCATTTTGAATCGGCTGGAGGAGACAAAATTAAGGGCTGAGAGTCGTTCGTTCTCTATGTCTCATGCATCAGATCAAGAAATTTTAAACAGTGAATACAAGAGGATGTATGCACTTTAG 1710 0.4503 MENQNSFRAPTMEKQQSFRRVMEKQRSFRGFMEKQKSFRIVMEKQLSFIGNGERKKSKESPGKRGDLPIHLAARAGNLSRLKEIIQNCASDELKNLLAKQNLEGETPLYVASENGHASVVGEILKHLDLETASIAARNGYDPFHVAARQGHVEVLRELLHSFPNLAMTTDLANSTALHTAATQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLNKDPSTGFRTDKKGQTALHMAVKGQNEEILLELVKPDPTVLSLGDNKGNTALHIATSKGRIQNVRCLLAMEGININMTNKAGETPLDIAEKFGTPELVSILRVAGATNSTDQAKPPSATKQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVQEKTQGLSLGQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKRQLVFVINKLMWTACLFISIAFISLTYVVVGPHSKWLAIYATVIGSLIMVSTIGSMAYCVILNRLEETKLRAESRSFSMSHASDQEILNSEYKRMYAL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1117 569 Gene3D - 53 163 IPR036770 -
Lan16g1117 569 ProSiteProfiles Ankyrin repeat region circular profile. 206 229 - -
Lan16g1117 569 SUPERFAMILY Ankyrin repeat 68 332 IPR036770 -
Lan16g1117 569 MobiDBLite consensus disorder prediction 1 20 - -
Lan16g1117 569 ProSiteProfiles Ankyrin repeat profile. 103 139 IPR002110 GO:0005515
Lan16g1117 569 ProSiteProfiles Ankyrin repeat profile. 206 238 IPR002110 GO:0005515
Lan16g1117 569 ProSiteProfiles Ankyrin repeat profile. 64 96 IPR002110 GO:0005515
Lan16g1117 569 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Lan16g1117 569 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 569 - -
Lan16g1117 569 SMART ANK_2a 274 304 IPR002110 GO:0005515
Lan16g1117 569 SMART ANK_2a 206 235 IPR002110 GO:0005515
Lan16g1117 569 SMART ANK_2a 172 201 IPR002110 GO:0005515
Lan16g1117 569 SMART ANK_2a 103 131 IPR002110 GO:0005515
Lan16g1117 569 SMART ANK_2a 138 167 IPR002110 GO:0005515
Lan16g1117 569 SMART ANK_2a 64 93 IPR002110 GO:0005515
Lan16g1117 569 SMART ANK_2a 240 269 IPR002110 GO:0005515
Lan16g1117 569 SMART ANK_2a 308 338 IPR002110 GO:0005515
Lan16g1117 569 Pfam Ankyrin repeats (many copies) 271 316 IPR002110 GO:0005515
Lan16g1117 569 Gene3D - 164 367 IPR036770 -
Lan16g1117 569 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 569 - -
Lan16g1117 569 Pfam Domain of unknown function 388 500 IPR026961 -
Lan16g1117 569 ProSiteProfiles Ankyrin repeat region circular profile. 274 307 - -
Lan16g1117 569 ProSiteProfiles Ankyrin repeat region circular profile. 103 126 - -
Lan16g1117 569 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Lan16g1117 569 Pfam Ankyrin repeats (3 copies) 143 229 IPR002110 GO:0005515
Lan16g1117 569 ProSiteProfiles Ankyrin repeat region circular profile. 138 159 - -
Lan16g1117 569 ProSiteProfiles Ankyrin repeat profile. 274 307 IPR002110 GO:0005515
Lan16g1117 569 ProSiteProfiles Ankyrin repeat region circular profile. 172 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1117 Lan-Chr16 18258177 18264818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1117 1 569 Miscellaneous Gene Families AT2G31820 72.402 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1117 - - aprc:113861257 945.651