Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1029 ATGTTTTTGGTTGATTGGTTTTATGGGGTTTTAGCATCACTTGGGTTGTGGCAAAAAGAGGCTAAGATATTATTCTTAGGCCTTGATAACGCTGGCAAAACCACCTTGCTTCATATGCTCAAAGATGAGAGATTGGTACAGCATCAGCCAACACAGTATCCGACATCGGAGGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATCTTGGTGGTCACCAGATTGCTCGAAGAGTCTGGAAAGATTACTATGCGCAGGTTGATGCAGTGGTCTACTTGGTTGATTCTTTTGACAAGGAAAGATTTGCTGAGTCGAAAAAAGAGCTAGATGCTCTCCTTTCTGATGAATCTTTGGCCAATGTCCCATTCCTTATCCTTGGAAACAAAATCGATATTCCATACGCTGCCTCGGAAGAAGAGTTGCGTTACCATTTGGGCCTGACGAACTTCACCACAGGCAAGGGTAAGGTGAATTTGTCGGACTCAAATGTTCGTCCCATGGAGGTATATATGTGCAGTATTGTGAGGAAAATGGGTTATGGAGATGGTTTCAAATGGCTTTCTCAGTACATCAAGTAG 582 0.4261 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDSFDKERFAESKKELDALLSDESLANVPFLILGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLSDSNVRPMEVYMCSIVRKMGYGDGFKWLSQYIK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1029 193 CDD Sar1 2 192 - -
Lan16g1029 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Lan16g1029 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Lan16g1029 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lan16g1029 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lan16g1029 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Lan16g1029 193 PANTHER PROTEIN SAR1A, PUTATIVE, EXPRESSED-RELATED 1 193 - -
Lan16g1029 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Lan16g1029 193 SMART arf_sub_2 4 193 - -
Lan16g1029 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Lan16g1029 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Lan16g1029 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 138 IPR005225 GO:0005525
Lan16g1029 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Lan16g1029 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Lan16g1029 193 Gene3D - 1 193 IPR027417 -
Lan16g1029 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1029 Lan-Chr16 17512439 17514810 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1029 K07953 - gmx:100305650 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0910 4 11092582 11095123 Lan16g1029 16 17512439 17514810 LSH
Lan16g1029 16 17512439 17514810 Lan2g0267 2 2235342 2238016 LSH