Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1028 ATGTACTCTTTCCTACAAAGAACGATTCAAACCTCAAAAATTCGACAAATTTGTAGGTTTTCCTTATTCCTACAAAAACTACAAACAACCTCGTCTCATTTGTCACATAACATTCTTGTTTCAAATGGCAGTTACAGTTATGGTTTTCACCAACGTAGTATTGTGTCTCCGAATCAGTTTCGATGTTTCGGTTCTGAATCAGAGAGTCTCACAGTGGAGGGAATTATAGCAAATAATTGGAACATTCTAGATGAGGATGATGGAGATTGGAAGAGTCATGCTGCTGCTGTAGCTCAATCTATTGATTTAATCAAACGACGGTTACAGTGGAAGAAACTGAAGGTTAGGTTGGATTTGCTATCAGCTCAGTTAGCTAAGCCAGACCTTTGGGATGATCCTGTGCATGCTGGAAAAATTAGCCGTGAGCATGGATCACTTTTAGGAAAAGTGAAAGAGGTTAATGCAATGGAGCAAGAGTTAATTGAGCATATTGATATGATAAAGCTTGCTCGCGAAGAAAATGATGAAGAATTGGAATCGGAATCACTGAAAGCTTTGCTTAACATGAGAAGAAATGCAAAAGAGAAAGAACTGGAGGCATTGCTTTCAGGGGAGCATGATTATTGTTCTTGCTACATCGAGGTTCAGGCTGGGGCCGGGGGTACTGAGAGCATGGACTGGGCTTCAATGGTCATGCAGATGTATAAATCATGGGCCCAGCGACGAGGATATAAAGTAATTGTAATGGAAGAAATGCCTGGTGAGCTTGCAGGAATCAAGCGAGCCACAATCAAAGTAGATGGCGAGTTTGCATTTGGCTATGCCAAAGCAGAAATAGGAGTGCACAGGCTTGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGACATACTTCATTTTCTGCTGTAGCCGTGATTCCCATCCTCGGTGATGGATCAACCCGTGTACAAATTAATGAATCCGATCTTCGAATTGAACGATTTCGCTCAGGTGGACCTGGTGGCCAGCATGCTAATACAACAGATAGTGCTGTAAGAATAATCCATATTCCTACAGGAATTACTGCAACTAGCCAGAACGAAAGATCACAACATATGAATAAGGCTTCAGCATTGGCTGTGCTTCAGTCTAGATTAGACCAAATGGAGATGGCGCGCCAGGCTCAATTGAATGCACAACATACACAATCTCTCACCGACATAACTTGGGGCAGTCAGATACGTAGTTATGTGCTCCATCCGTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCTGACTCTGTCCTTGAGGGAGATATAGATGCTTTCATTCTAAGCTACCTATCAGCTTCTTTGGACAAAGATGAAAGTAATGGTTAA 1374 0.4199 MYSFLQRTIQTSKIRQICRFSLFLQKLQTTSSHLSHNILVSNGSYSYGFHQRSIVSPNQFRCFGSESESLTVEGIIANNWNILDEDDGDWKSHAAAVAQSIDLIKRRLQWKKLKVRLDLLSAQLAKPDLWDDPVHAGKISREHGSLLGKVKEVNAMEQELIEHIDMIKLAREENDEELESESLKALLNMRRNAKEKELEALLSGEHDYCSCYIEVQAGAGGTESMDWASMVMQMYKSWAQRRGYKVIVMEEMPGELAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFSAVAVIPILGDGSTRVQINESDLRIERFRSGGPGGQHANTTDSAVRIIHIPTGITATSQNERSQHMNKASALAVLQSRLDQMEMARQAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDIDAFILSYLSASLDKDESNG* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1028 457 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 73 455 - -
Lan16g1028 457 Gene3D - 213 442 - -
Lan16g1028 457 TIGRFAM prfB: peptide chain release factor 2 91 448 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lan16g1028 457 Gene3D Release factor 89 199 - -
Lan16g1028 457 Pfam PCRF domain 115 303 IPR005139 GO:0006415
Lan16g1028 457 Hamap Peptide chain release factor 2 [prfB]. 86 450 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lan16g1028 457 Gene3D - 309 405 - -
Lan16g1028 457 SUPERFAMILY Release factor 114 449 IPR045853 -
Lan16g1028 457 Pfam RF-1 domain 315 422 IPR000352 GO:0003747|GO:0006415
Lan16g1028 457 Coils Coil 153 173 - -
Lan16g1028 457 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 73 455 - -
Lan16g1028 457 SMART PCRF_a_2 168 278 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1028 Lan-Chr16 17507551 17511308 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1028 K02836 - gmx:100797427 702.205