Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0941 ATGGGTCTCTCATTCACGAAGCTGTTTAGTCGTTTGTTTGCGAAGAAAGAGATGCGTATACTTATGGTGGGTCTTGATGCTGCTGGTAAAACCACCATTCTTTATAAGCTCAAGCTTGGAGAAATTGTCACCACCATTCCCACTATTGGGTTTAATGTGGAAACTGTGGAATACAAGAACATCAGCTTCACTGTCTGGGATGTTGGTGGCCAAGACAAGATTCGTCCTTTGTGGAGACATTACTTTCAAAATACGCAAGGACTTATTTTTGTGATTGATAGCAATGATCGGGACCGTGTTGTTGAAGCTAGAGATGAACTGCACAGGATGTTGAATGAGGATGAGTTGAGAGATGCAGTGCTTCTAGTTTTTGCAAACAAACAAGATCTTCCTAATGCTATGAATGCTGCTGAAATAACTGATAAGCTTGGTCTTCATTCACTTCGTCAGCGTCACTGGTATATCCAGAGCACCTGTGCCACATCTGGTGAAGGACTTTACGAAGGACTTGACTGGCTTTCAAACAACATCGCAAGCAAGGCTTAG 546 0.4267 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVIDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0941 181 TIGRFAM small_GTP: small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Lan16g0941 181 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lan16g0941 181 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lan16g0941 181 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lan16g0941 181 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Lan16g0941 181 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Lan16g0941 181 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 178 IPR027417 -
Lan16g0941 181 Gene3D - 4 181 IPR027417 -
Lan16g0941 181 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Lan16g0941 181 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Lan16g0941 181 SMART arf_sub_2 1 181 - -
Lan16g0941 181 SMART rab_sub_5 18 180 - -
Lan16g0941 181 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Lan16g0941 181 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 181 IPR024156 GO:0005525
Lan16g0941 181 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0941 Lan-Chr16 16473820 16476804 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0941 K07937 - thj:104821082 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0941 16 16473820 16476804 Lan2g0231 2 1899199 1901967 LSH
Lan16g0941 16 16473820 16476804 Lan8g0389 8 6046559 6049342 PCT
Lan8g0389 8 6046559 6049342 Lan16g0941 16 16473820 16476804 PCT