Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0908 ATGGCTATGGTAGCAGTTAGTGTGCACCATCAATTTCTCTTCTTCTCAACAAAATCAATTTTGAGAAGTAGAAATTTAACAAACCCATCATGTTTTTCTCCTTACACTGCCAACATTCTTCTAAATTCACACAAAAAGAATCAATTTTCATTCATTTCATGTTCTTCTTCACAGACCCCAGAAACTGCTGATATTCAAACTCCTGAATCTTGTGTTAATTTGGGTCTTCAGCTTTTTTCCAAAGGAAAAGTCAAAGATGCTTTAACACAGTTTGAAACAGCACTTTCTTTGAATCCTAATCCTATTGAGGCCCAAGCTGCTCTATATAACAAAGCTTGTTGCCATGCATACAGAGGGGAAGGAAAGAAAGCTGCTGATTGTCTCCGAACTGCTTTGAAGGAATACAACCTAAAATTTGGTACAATTCTCAATGATCCAGATTTAGCATCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCCAGGCTGGGTGGGGAAGATATTGGCAACAGTTTTCGAAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGCGGGGTTAGGAGATTCTTTTATGTAGCATTCACAGCTGCAGCAGGGATATCATTGTTTTTAACAGTGCCGAGGCTCTTTCGTGCAATTCAAGGTGGTGATGGTGCTCCTGATCTCTTGCAAACTGCTCAGAATGCTGCCATTAACATCGGAGGTATTGTTGTTTTTGTGGCATTATTCTTGTGGGACAATAAAAAGGAGGAGGAGCAGCTTGCGCAGATAACCCGAAATGAGACACTATCAAGGCTACCTTTGCGCCTTTCAACTAATCGAATAGTTGAACTTGTGCAGCTACGGGACACAGTTAGACCAGTTATATTAGCAGGGAAAAAAGAAACAGTATCTTTGGCACTGCAAAGAGCAGAGAGATTTCGAACTGATCTCCTTAAACGCGGTGTTTTGTTAGTTCCTGTCATTTGGGGAGAAGGTAAGGAAACCAAAATTGAGAAGAAAGGTTTTGGTATTCGACCGAAGGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAAAAGCGAACACAGTCAATAAGTGCAAAATCTAAGTTGAAAGCTGAAATAAGGTTCAAGGCTGAAGTTGTATCACCAGCAGAATGGGAAGGGTGGATAAGGGATCAGCAGAAGTCTGAAGGAGTTACTGTTGGCGAAGACGTGTACATAATACTGCGCTTAGATGGGCGAGTTCGAAGATCCGGGAAAGGTGTGCCAGATTGGCTGCAAATTGTGAAGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1341 0.4131 MAMVAVSVHHQFLFFSTKSILRSRNLTNPSCFSPYTANILLNSHKKNQFSFISCSSSQTPETADIQTPESCVNLGLQLFSKGKVKDALTQFETALSLNPNPIEAQAALYNKACCHAYRGEGKKAADCLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGNSFRRDLKLISEVQAPFRGVRRFFYVAFTAAAGISLFLTVPRLFRAIQGGDGAPDLLQTAQNAAINIGGIVVFVALFLWDNKKEEEQLAQITRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSLALQRAERFRTDLLKRGVLLVPVIWGEGKETKIEKKGFGIRPKAAEALPSIGEDFEKRTQSISAKSKLKAEIRFKAEVVSPAEWEGWIRDQQKSEGVTVGEDVYIILRLDGRVRRSGKGVPDWLQIVKELPPMEAFLSKLER* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0908 446 Gene3D Tetratricopeptide repeat domain 45 158 IPR011990 GO:0005515
Lan16g0908 446 SMART tpr_5 105 138 IPR019734 GO:0005515
Lan16g0908 446 SMART tpr_5 68 101 IPR019734 GO:0005515
Lan16g0908 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 5 446 - -
Lan16g0908 446 SUPERFAMILY TPR-like 65 134 IPR011990 GO:0005515
Lan16g0908 446 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Lan16g0908 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 5 446 - -
Lan16g0908 446 Pfam Low psii accumulation1 / Rep27 176 253 IPR021883 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0908 - - gmx:100784188 716.842