Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0891 ATGAGTAGCTTAACAACAAGCTTCTCAATTCGAATATGTAACTCTCGTTCTGACCTAATCCCTATACGACACCGTTTCCTTCGTCAATTCATCAAAACACGTGTCACTCTTTTACCAACCAAATCACTTAGACCACATCCAAAGATTGTGTGCATGGCGGAACCTTATATGATAACCAAGCTTGAATCAGCGGAGAAGACCTGGAAAGAGTTATCGGTGAAGTTGGCTGATCCCGATGTTGTGTCTAATCCCAGTGAGTATCAAAAGTTGGCACAATCTGTTTCTGAACTCGACGAGGTTGTGTCCACATACAGGAGTTTTAAAGAGTGCGAGAAGAACCTAGAAGAAACTAAAGCTTTAGCAAAGGATGATGGCAATGACGAGGATATGGCCCAAATGATATCATATGAAATTGAATCTTTGTCAAGGCAACTGGAAGAGCTTGAGGGAAAGCTTAAGTTGTTACTGCTCCCCAGTGATCCTCTGGATGCAAGAAACATAATGCTTGAAGTACGAGCAGGTACTGGAGGTGACGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAAATATAGTGAACGAAGTTCTTGGAAGTTCTCTCCGGTCTCATGCTCTGAGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAGATAAAAGGAAAACGTGTCTATAGTAAATTAAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCTCTAACAGAAACACAGGGTCGGGTACATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTTGAAATCGACCCAAAAGATATTGAGCTAACAACGGCACGTTCTGGGGGTGCAGGAGGCCAAAATGTTAATAAGGTGGAAACAGCCATTGATCTATTCCATAAACCAACTGGAATCCGCATCTTTTGTACTGAAGAAAGAACTCAACTTCAGAACAGGCATCGTGCTTTTCAGTTGCTCCGAGCAAAACTCTTAGAAATTAAGGTAAGGGAGCAGCAAGAGTCAATACGAAATCAAAGGAAATTACAGGTTGGAACAGGTGCACGAGCAGAGAAAATTCGGACGTATAATTACAAGGACAATAGGGTAACTGATCACAGATTGAAGATGAACTTTGAGCTCACCTCTTTTCTTAACGGTGACATAGAAAATGCTGTTCAGTCTTGTGTTACAATGGAGCAAAAGGAGCTTCTGGAAGAACTTGCTGAATCTGTAGGAGCTCCAGCTGGTTGA 1260 0.4238 MSSLTTSFSIRICNSRSDLIPIRHRFLRQFIKTRVTLLPTKSLRPHPKIVCMAEPYMITKLESAEKTWKELSVKLADPDVVSNPSEYQKLAQSVSELDEVVSTYRSFKECEKNLEETKALAKDDGNDEDMAQMISYEIESLSRQLEELEGKLKLLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVRMYEKYSERSSWKFSPVSCSEAEKGGYKTYVMEIKGKRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVEIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNRHRAFQLLRAKLLEIKVREQQESIRNQRKLQVGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLNGDIENAVQSCVTMEQKELLEELAESVGAPAG* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0891 419 Coils Coil 331 351 - -
Lan16g0891 419 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 283 299 IPR000352 GO:0003747|GO:0006415
Lan16g0891 419 PANTHER LD18447P 11 417 - -
Lan16g0891 419 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 11 417 - -
Lan16g0891 419 Gene3D - 51 161 - -
Lan16g0891 419 Coils Coil 131 151 - -
Lan16g0891 419 SUPERFAMILY Release factor 66 407 IPR045853 -
Lan16g0891 419 SMART PCRF_a_2 119 234 IPR005139 GO:0006415
Lan16g0891 419 Pfam RF-1 domain 266 376 IPR000352 GO:0003747|GO:0006415
Lan16g0891 419 Gene3D - 163 273 - -
Lan16g0891 419 Hamap Peptide chain release factor 1 [prfA]. 57 411 IPR004373 GO:0006415|GO:0016149
Lan16g0891 419 Pfam PCRF domain 65 259 IPR005139 GO:0006415
Lan16g0891 419 Gene3D - 274 335 - -
Lan16g0891 419 TIGRFAM prfA: peptide chain release factor 1 53 412 IPR004373 GO:0006415|GO:0016149
Lan16g0891 419 Gene3D - 336 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0891 Lan-Chr16 15714579 15720959 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0891 K02835 - gmx:100777225 687.182