Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0871 ATGACTGAAGAAGCATTCTACTCCTTTCGTTCTCATTCTCAACCTCCTTCACCACTTGGAGGTGGAAACAAATATGCAAATGGAGATGAGCAGTTTCAAGAAACTGAGCTTTTTGAGGACACACTAGTGATTAATAATAGTCCCTTTACTGAAAATCTCAATCTGAACACTGAGCTTGTGGAGGATTCAGACCCTGAAGAGAACATGACAAGTGGTGCAATATGTGAGTATGAACAAGAAGTAGTTCTTGATAGTGAGGATGAAGAAATGGAAAATGGTGAAGTAGTAACCGTTGCCAAAGGATTAATTGAGGATGAAAGTAGTCCAACATTAAGAAGTCCTTTGATGCGTTTCCATAAGAGACAGCCGAAGCCATCTCTTGGGCAAGCAGTCTCATATGGCACCACTCCTGAAAAATATGCTATAGGGGACAAAGAAGTTCTGAATGGTGCTGACAGATTTTATGACAACAGTCATCTATATCTACCTGCAAGGTTAAATCACATTCACTCATCCAGTCCGGAGAATTCAACCCAAGATGCTCTTGGCTTTGTGGATCGGTACTTGTCTTCTAACAGTGTGGATTTATTCCAAGGAGTTCAGCATAGAAAGGGAACTCGAGTTAAATCACCTTATGTCCCAAGTGCAAGAGGATCTCTAAGTTTGGCCAAGAAAATTAAAGTTCGAACTCTAAAAGAGGAAATTGAACCCTTCAAATTGGTTGAAAGTGATCAGAATGACAAAGGAGCTGGTATCTTTTGTAAAAATATTGAAGCATCTTCAAACTTTAAAAGCTATAGAGAGACATATACGAGAAGACAGAAAAAAGGTGCCCATCTTCAGAGTCAAGGGAACTGTAGTACAGGTAATGGATGTCAAGAGAAGTTAGTACAAGGACCAGGAATCATAACAGAAAATGATAACCCTATCAAGGAGTTAGATGTTCAGTCAAGTGGAACAAGAGAGAATGTTGATGCCTATTCCAGTGTAACAAATACTGAAGATATGCCTGATATTGGTTTAGATACTCAAATAGCTGCCGAAGCTATGGAGGCCTTAGCCTATCTATCCCCTTCTGGTAATCATTTTAATGATGCTCACCAACCAGCAAATGCACTTGATGGCTCTTTGAGTGATTTGACGGAGAATGGATCTCATCTGGGAATTTCTGCAAACAGACAGAAACCTGGTTTACAGTCTATCACAATAAAATCAAACAAAAGAGATGTCTCTTCCTGTAGCTTTAGTACACTAACTTCTTCCTCTTGCAAGAACACTGACAATCAGGATCCAAACCTTGCCTCCAGGAAAATGAAAAGGATAATGGAAAGCAAGTCAAATATTGAGGGACACTTTGAAAATAATACCAGTTCTCCAATATCCTGTGAAAATGTCTCATTCGAACAGGGTTGCTCACCAGGAGAGTATAAGAACTTCCAACGTGCTGCCAAGGAACAGAAAAATTGGAATAACGGGAGCACATGGACAAGGATCAAAGATCCACTAAGCCATCATACATGGAGGAACAATAGTGTCAAGGAGGAAGGCATTATTAGACACAAGAGGAAGGAGAATGGTTTGGTCAATGATTCATTGACATTGGATGTTAGGACAAAATATCTGAAATTGCCTTCCAATTCATGTGGGGTGACGAGGAAGAGCAGGTTGAATCATCAGGTTCAAACTAGTCCACAGCTATCTGCATGTAGCAGTCTTTTAAGGATTGATTCTTGGCTTTACCCAAAAAGACCAAGAGGAAAAAGAAAGCGGGTTAATGTGCAAACCAATCTTGATGCACCTACAATTTTGTGTATTGATGGAAAAGAAAACGTTCTTTCCACTCGCAATCTAGAAGGCCAAGATGATGTCGATGAATCATGTTTACCTCCCACCCATCCACTTCTCAAAATTTCAAGTATTGAAAATGGTGAATGCTTGTTACAGTGGGATTCTGTTCAACCAGGTTTACCTGGCGATGCCATGACATTTCAAAACATGCATGACAAGCATCCCTTATTGCTGGCACATGTTGAAATATCATCGAAAAAGAGCATCGCAAAACAGAGTATGAAAAATCCAGCTCTAGACACCTCAACTGAAGGAGTAAATATTTCAAATGCTAAACAAACATATAACGGGTATAAAAAAAGGCCGCGCAACAAAAACTTGCCAAAGTCACCCCTTTTCAAGGAGCTTAACAGATTAGGAGTATCTGAGTTCAGACAAGATCTGACATGGAAAGATCTGAGACAGCGAAGAGATATGAAATATGTCCGAGTTCTGTTTAGCCAGCATTTGGATGACAGTGTTATCAAGCAGCAGAAAAAGATCTTGGCACGGTTCAACATTTCTATTGCATCTAGCTTAATGGAGGCCACACATTTCATAGCAGACAAATTTACTCGTACAAGGAATATGTTGGAAACAATGGCTCTTGGTAAATTTGTGGTGACTCACTTGTGGCTTGAGAGCTGTGGGCAAGCCAACTGCTTTATTGATGAGAAAAATTACATTCTGCGGGATGTACAAAAAGAAAAGGAAATAGACTTTAGCATGCCCGTTTCTCTCATTCGAGCAAGAGAGAAGCCACTCCTGAAGGGTAAACGAGTCTACATCACGCCACATGTTAAACCTGACAAGGAAGTCCTCACGAGCTTGGTCACAACTGTTCATGGCCAGGTAGTGGATGGTAGTCAGATATGTCCAGACAAGAATGATAAGATCCCAGATGATATATTGATCCTTTCTTGTGAAGACGACTATGCAATTTGCCACCATTTTCTTAATAGAGGAACTGCTGTTTACAGTTCAGAACTTCTTCTGAATGGAATTGTAATCCAGAAGTTGGAACTTGAGAGACATCAACTCTTCATGAATCATGTTACAAGGAATAACCCAGGTACATTAAATCGGTTCGGGAAGGTTTACAAAAGGCGTTTGAGACCTGTAACTGGACCATAG 2961 0.4022 MTEEAFYSFRSHSQPPSPLGGGNKYANGDEQFQETELFEDTLVINNSPFTENLNLNTELVEDSDPEENMTSGAICEYEQEVVLDSEDEEMENGEVVTVAKGLIEDESSPTLRSPLMRFHKRQPKPSLGQAVSYGTTPEKYAIGDKEVLNGADRFYDNSHLYLPARLNHIHSSSPENSTQDALGFVDRYLSSNSVDLFQGVQHRKGTRVKSPYVPSARGSLSLAKKIKVRTLKEEIEPFKLVESDQNDKGAGIFCKNIEASSNFKSYRETYTRRQKKGAHLQSQGNCSTGNGCQEKLVQGPGIITENDNPIKELDVQSSGTRENVDAYSSVTNTEDMPDIGLDTQIAAEAMEALAYLSPSGNHFNDAHQPANALDGSLSDLTENGSHLGISANRQKPGLQSITIKSNKRDVSSCSFSTLTSSSCKNTDNQDPNLASRKMKRIMESKSNIEGHFENNTSSPISCENVSFEQGCSPGEYKNFQRAAKEQKNWNNGSTWTRIKDPLSHHTWRNNSVKEEGIIRHKRKENGLVNDSLTLDVRTKYLKLPSNSCGVTRKSRLNHQVQTSPQLSACSSLLRIDSWLYPKRPRGKRKRVNVQTNLDAPTILCIDGKENVLSTRNLEGQDDVDESCLPPTHPLLKISSIENGECLLQWDSVQPGLPGDAMTFQNMHDKHPLLLAHVEISSKKSIAKQSMKNPALDTSTEGVNISNAKQTYNGYKKRPRNKNLPKSPLFKELNRLGVSEFRQDLTWKDLRQRRDMKYVRVLFSQHLDDSVIKQQKKILARFNISIASSLMEATHFIADKFTRTRNMLETMALGKFVVTHLWLESCGQANCFIDEKNYILRDVQKEKEIDFSMPVSLIRAREKPLLKGKRVYITPHVKPDKEVLTSLVTTVHGQVVDGSQICPDKNDKIPDDILILSCEDDYAICHHFLNRGTAVYSSELLLNGIVIQKLELERHQLFMNHVTRNNPGTLNRFGKVYKRRLRPVTGP* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0871 986 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 758 839 IPR001357 -
Lan16g0871 986 PANTHER BRCT DOMAIN-CONTAINING PROTEIN-RELATED 27 964 - -
Lan16g0871 986 SUPERFAMILY BRCT domain 752 854 IPR036420 -
Lan16g0871 986 Gene3D BRCT domain 746 862 IPR036420 -
Lan16g0871 986 MobiDBLite consensus disorder prediction 1 20 - -
Lan16g0871 986 ProSiteProfiles BRCT domain profile. 791 839 IPR001357 -
Lan16g0871 986 CDD BRCT_PAXIP1_rpt6_like 864 950 - -
Lan16g0871 986 CDD BRCT_MDC1_rpt1 758 832 - -
Lan16g0871 986 Gene3D BRCT domain 863 963 IPR036420 -
Lan16g0871 986 MobiDBLite consensus disorder prediction 1 23 - -
Lan16g0871 986 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 27 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0871 Lan-Chr16 15529547 15535005 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0871 - K20780 gmx:102659913 1182.55