Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1061 ATGGGTCACGTTGGTTCAAGCAAAGATCCCAAATTTTCAAACATAGAGAAAGATTTAGACTTATTGGACATCGATAACGATGATTACTACACTGGCTTCTCCTCCGATGAAAACGACGACGTTGAAATCGATCTACCTCCAAATCGCGCCCTCGAGGGTTTAGGTGAAACAACGGTAAAAAACTTTTGCCACAAAGCTTCAACATTGTTCTTCAAAGAAAACGGTCTCATCAGTCATCAAATTAATTCCTTCAATTCCTTCACTAGTAATGGGATTCAGAGCATCTTCGAGTCATTCGGTGAACTCCTCGTTACTCCAGGATTCGATCCATCGAAGAAAGGTGACAGTGATCACTACCGTTACGCTGCGGTGAAGTTTGGGAAGGTTACAATTGATAGACCTAAGTTTTGGGGAGGTGAAGGGAGCACGGAAGAATTTAAGTTGCTTCCGCGACATGCGAGGATTCAGAGGATGACTTATTCGTCGAAGATGAAGATCAATGTGCAAATTCAGATTTACGTCCCAAAAATTATTCGAAGCGACAAATTTAAGACTGGGAAGGATCAATATGTTGACCGAGAGATTTTGAAGGAAGACAGCAGAGAAATAATCATTGGGAGGCTGCCTGTCATGGTTATGTCTGATCTATGCTGGATGAAAGATGCTGGCAAACCTGATTGTGAATTTGATCATGGAGGCTACTTCCTCATCAAGGGTGCTGAGAAGACTTTTATTGCACAGGAGCAAATCTACACAAAGAGGCTCTGGGTTATAAACAGTCCATATTGGTCAATTGCATACAAGTCACCTATGAAGAGAAATAGGCTGGTCATCAAACTGGTTGGTAATTCAAGAATTGAGGAAATCAACAGTGGAGAGAAGATGCTGACTGTCTACTTTCTGTCTGTTGAGATCCCTGTGTGGATACTCTTTTTCATTCTTGGTGTCACATCAGACAAAGAGGTTATGGATCTCATTGATTGTGGAAATGGTGATGTCAGGCTTGAAAATATACTTTCTGCATCCATCCGTGACGCTGATGAGAAATGTGAAGGATTTCGTAAAGGGAAGAATGCCCTGCATTACCTGGAAGGATTTGTAAAAGGGGTACAATTTCCACCTCCTGAATCTATTGAGGAGTGTCTCAACCTTTACGTCTTTCCCAATATAAAAGGCTTGAAGAGAAAGGCACGCTTCTTGGCGTACATGGTTAAGGGTCTCCTGCTAGCTTACAGTGGTCGCAAAAGATCTGATAACAGGGATGATTTTAGGAATAAGAGGATTGAATTGGCTGGGGAGCTGCTTGACCGCGAGTTAAGAGTGCACATTGCACATGCTCGCAAGCGAATGTCAAAGGTTCTACAGAGAGACCTTTATGGAGATCGTGAAGTACGGCCAGTTGAACATTATCTGGATGCTTCCATAATTACCAATGGTCTTCAAAGAGCATTCTCTACTGGAGCATGGTCGCATCCCTTTAAAAGGATGGAAAGGGTATCCGGTGTGGTGGCGAATCTTGGGCGCACTAATCCTTTGCAAACCGCTGCTGATCTGCGAAGGACCAGACAGCAAGTTCAGTATACAGGAAAGGTTGGAGATGCTAGATACCCGCATCCTTCTCACTGGGGAAAGGTTTGCTTCCTCTCTACCCCGGATGGTGAGAATTGTGGGCTTGTAAAAAATTTGGCTGTGACAGGACTAGTGAGTATCAACATATCTGAATCTATACTGCCTCAGTTGATTGAGTGTGGATTGGAAGAGCTTGCAGATGATACTTCTACTTATCTGGGAAAAAAGGATAAGGTCTTCCTTAATGGGGATTGGGTTGGAGTTTGTGCAAATTCTATTTCATTTGTGGATGAGTTGAGACGCAAAAGACGAACAAAGCAATTGCCTCATCAGGTGGAAATAAAAAGAGACCAGAGTCAACAAGAGGTGCGTGTATACTCTGATGCAGGAAGGATTTTGCGTCCGCTTTTGGTAGTTGATAATCTATACAAGATTAAGGAATCTAAAGGATCTAAATGGGAGCCTGATTCTTTCCAGTCTCTACTGGAAAATGGAGTAATTGAGCTTGTGGGACACGAGGAAGAGGAAGACTGCTGTACTGCTTGGGGTGTTCAGTATTTATTCAGAAAGGCGGGTAAATCTTCTGTGAAGTACACGCACTGTGAACTTGATATGTCATTCTTGTTGGGTTTAAGCTGTTCGCTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTCCTGTACCAATCACAGAAGCACTCATCGCAGGCAATTGGCTTCTCTACTTTAAATCCAGACATTAGAGTTGATACTCTGTCACACCAATTAAACTATCCCCAAAAGCCCCTGTTCCGAACAATGACATCTGATTGTCTTGGGAAACCTGGATATTCAGAAGTTCAAAATAGAATACTGCCGAAGGCTGAATTCTACAATGGGCAGAATGCCATTGTTGCTGTCAACGTTCATCTGGGTTATAATCAAGAGGATTCCTTGGTGATGAACCGTGCTTCCTTACAACGTGGTATGTTCAGATCTGAGCATGTAAGGAGTTACAAAGCTGATATTGAAAATAATGAATCTTCCGAGAAGAAGCGGAAGCCTGAAGACATTGTAAATTTTGGAAAGATCCACAGCAAGATTGGTAGAGTTGATAGCCTTGATGATGATGGCTTTCCATACGTTGGTGCAAATTTGCAGAGTGGTGATATCATTATTGGGCGGTGTGCCGAGTCTGGGGTGGACCATAGTATTAAGCTGAAACACACTGAAAGGGGCTATGTTCAGAAGGTTGTGCTGTCCTCAAATGACGAGGGGAAAAATTTTGCTGTGGTTTCTTTGAGACAGGTTAGAACTCCAGTGCTTGGAGACAAGTTCTCAAGCATGCATGGACAAAAAGGTGTGTTGGGATTTTTGGAGTGTCAAGAAAATTTTCCTTTCACAAGACAAGGTATTGTTCCTGATATTGTCATAAATCCACATGCATTTCCCTCACGTCAAACTCCTGGGCAACTCTTAGAGGCTGCTTTAGGGAAGGGCATTGCTTTGGGTGGTTCATTGAGATATGCTACCCCATTCTCCACTCCTTCAGTTGATGCCATAACGGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGTAACGAGAGAGTCTACAATGGGAGAACTGGTGAGATGGTCCGCTCACTCATCTTTATGGGTCCAACATTCTATCAGAGATTGCACCACATGTCTGAAGACAAAGTAAAATTCCGGAACACTGGTCCTGTTCATCCATTGACCCGACAGCCCGTGGCGGACAGGAAGCGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGCCTTATAGCTCATGGTGCGTCAGCAAACTTGTATGAACGTCTCTTCACACTGAGTGACTCATCGCAGATACACATTTGTAGCAAATGCAAAAATGTTGCAAATGTGATCTTACGGCCAGTGTCTGGTGGCCGTAAAGTAAGGGGTCCTTACTGCCGTGGCTGTGAATCTGTTGATGACATTGTCGTGGCCAATGTCCCATATGGAGCTAAATTATTGGTCCAGGAGCTTTTCAGCATGGGCATAAGTCTCAAATTTGAAACCAAACTCTGCTAG 3633 0.4352 MGHVGSSKDPKFSNIEKDLDLLDIDNDDYYTGFSSDENDDVEIDLPPNRALEGLGETTVKNFCHKASTLFFKENGLISHQINSFNSFTSNGIQSIFESFGELLVTPGFDPSKKGDSDHYRYAAVKFGKVTIDRPKFWGGEGSTEEFKLLPRHARIQRMTYSSKMKINVQIQIYVPKIIRSDKFKTGKDQYVDREILKEDSREIIIGRLPVMVMSDLCWMKDAGKPDCEFDHGGYFLIKGAEKTFIAQEQIYTKRLWVINSPYWSIAYKSPMKRNRLVIKLVGNSRIEEINSGEKMLTVYFLSVEIPVWILFFILGVTSDKEVMDLIDCGNGDVRLENILSASIRDADEKCEGFRKGKNALHYLEGFVKGVQFPPPESIEECLNLYVFPNIKGLKRKARFLAYMVKGLLLAYSGRKRSDNRDDFRNKRIELAGELLDRELRVHIAHARKRMSKVLQRDLYGDREVRPVEHYLDASIITNGLQRAFSTGAWSHPFKRMERVSGVVANLGRTNPLQTAADLRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSINISESILPQLIECGLEELADDTSTYLGKKDKVFLNGDWVGVCANSISFVDELRRKRRTKQLPHQVEIKRDQSQQEVRVYSDAGRILRPLLVVDNLYKIKESKGSKWEPDSFQSLLENGVIELVGHEEEEDCCTAWGVQYLFRKAGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPDIRVDTLSHQLNYPQKPLFRTMTSDCLGKPGYSEVQNRILPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHVRSYKADIENNESSEKKRKPEDIVNFGKIHSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGVDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRTPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGSLRYATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKVRGPYCRGCESVDDIVVANVPYGAKLLVQELFSMGISLKFETKLC* 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1061 1210 Gene3D RNA polymerase Rpb2, domain 2 262 418 IPR037034 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 Pfam RNA polymerase Rpb2, domain 2 288 429 IPR007642 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 46 1207 - -
Lan15g1061 1210 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 60 1207 - -
Lan15g1061 1210 ProSitePatterns RNA polymerases beta chain signature. 960 972 IPR007121 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 Pfam RNA polymerase beta subunit 75 466 IPR007644 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 Gene3D - 767 956 IPR014724 GO:0003899
Lan15g1061 1210 Pfam RNA polymerase Rpb2, domain 6 736 1107 IPR007120 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 Gene3D - 737 1093 IPR037033 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 Pfam RNA polymerase Rpb2, domain 5 681 727 IPR007647 GO:0006351
Lan15g1061 1210 Pfam RNA polymerase Rpb2, domain 4 602 663 IPR007646 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 Pfam RNA polymerase Rpb2, domain 7 1109 1207 IPR007641 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 Pfam RNA polymerase Rpb2, domain 3 506 565 IPR007645 GO:0003677|GO:0003899|GO:0006351
Lan15g1061 1210 CDD RNA_pol_B_RPB2 76 1206 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lan15g1061 1210 Gene3D RNA polymerase alpha subunit dimerisation domain 1094 1208 - -
Lan15g1061 1210 Gene3D - 69 251 - -
Lan15g1061 1210 Gene3D - 419 601 - -
Lan15g1061 1210 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 46 1207 IPR015712 GO:0003899|GO:0006351|GO:0032549
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1061 Lan-Chr15 19661687 19668092 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g1061 - K16252 gmx:100815934 2008.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1061 15 19661687 19668092 Lan3g1111 3 23466055 23472250 LSH