Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0970 ATGGGTATAACAGAAGCATGTTCAAGATTGATAGGGGACTTGTTCCAAGCATTCAAACACTCACCACCATGCACAATACCTCACCTTGATCACAATCATGACCCTACATGCAATCCTCAAAATGTGGTCAAACTTGATGAAAAGATGGTCACTGCTCTTGTCACTGTCTTTGGCATGCAAAACAATGGAAAAATCAAGAAGGAAAATGCTAGGAAAGTGGTGGAGAAGCTTGGTTTGATGTATGGTTCTAAGGAGGACAAGCCTTCAAGATTTGAGCTAGTTGTTGAGGGTGGCTTGCAGGATGATGAAGTGCCTGTAGAAGATGTGCTTGGTGAGTTGGAAGACGACATGTCGAAGCGAAGCGAATTGTTACAAGAAGCTTTCAAAATATTTGATGAGGATGGAGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGTTTGGACAAAGGTTGGGATATTAATACAATTGAAAAGATGGTGAAGGTTGTAGATTTGAACTTTGATGGCAAAGTTGATTTTAGTGAGTTTGTATTGATGATGGGATAG 564 0.4078 MGITEACSRLIGDLFQAFKHSPPCTIPHLDHNHDPTCNPQNVVKLDEKMVTALVTVFGMQNNGKIKKENARKVVEKLGLMYGSKEDKPSRFELVVEGGLQDDEVPVEDVLGELEDDMSKRSELLQEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDINTIEKMVKVVDLNFDGKVDFSEFVLMMG* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0970 187 CDD EFh 124 186 IPR002048 GO:0005509
Lan15g0970 187 ProSiteProfiles EF-hand calcium-binding domain profile. 157 187 IPR002048 GO:0005509
Lan15g0970 187 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Lan15g0970 187 SMART efh_1 123 151 IPR002048 GO:0005509
Lan15g0970 187 SMART efh_1 161 187 IPR002048 GO:0005509
Lan15g0970 187 Pfam EF-hand domain pair 123 186 IPR002048 GO:0005509
Lan15g0970 187 PANTHER CALCIUM BINDING PROTEIN 108 186 - -
Lan15g0970 187 SUPERFAMILY EF-hand 50 186 IPR011992 -
Lan15g0970 187 Gene3D - 28 187 - -
Lan15g0970 187 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Lan15g0970 187 PANTHER CALCIUM BINDING 108 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0970 Lan-Chr15 18969376 18970178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0970 111 186 EF-hand Containing Proteins AT4G20780 54.430 6.11e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0970 - - adu:107470962 266.929