Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0968 ATGTGTTACACTTTTTTCATTGGTCTCTTGAAGAAGTGTTCAAAAAACCGTTTGCTTAATCAGGGAAAGCAAGTACACGGGGTTGTGGAAAAACTAGGGTATCGGTGTGATTTAGTTTTGAACAATGATCTTATTGATATGTATGCAAAATGTGGCACCTTGGACTTCGCTTGTTTCGTGTTTGATAAAATGCCTGAGAGAAATGTGGTGTCTTGGACAGCTCTAATGTGTGGTCATCTACAGAATGGTGATGCCGAAGCCTCTTTAGTGCTGTTCTCTAAAATGGGTCGTTCAGCTGTTAAGCCGAATGAGTTTACACTTTCTACTTGTCTGAAATCATCGGGGATTTTGGGAATTCTTGAGAACGGAATGCAGATTCATGGTGTTTGTGCAAAATCTAATTTTGAGAGAGTACTTGTTGTGGGCAATTCAATCATTGACATGTACTCCAAGTGTGGTAGGATTAGCGAGGCAGCTCGAATGTTTAATGCTATGCCTGTAAGGAATCTTATTAGTTGGAATTCAATGATTGCTGCATATAGCCATGAAAGAAATGGTGAAGAGGCTTTAACACTGTTTAGGCAAATGCAAGAGAAGGGGGAAGTTCCTGATGATTATACATATTCAAGCACGTTAAAGGCATGTAGCTGTCTTGGTGCAATAGGAGAAGGAGCCCAAATACATGCTTCCTTACTCCGACAAGGATTTCCATACTTGGCTCAATCAACCATTGCAGGCGCGCTGGTTGATCTATATGTCAAATGCAGCCGCATAGATGAAGCGAGGAAAGTGTTCGATCGAATTGAACAAAAGAATGTGATATCTTGGACAACATTAATTCTCGGTTATGCTGAAGAAGACAATTTGCCAGAAGCCATGGAATTGTTTCAGAAACTAAGAGAAAGCAGACATAAAGTGGATGGGTTTGTACTCTCTAGTCTCGTAGGCGTGTTTGCTGATTTAGCCCTTGTACAGCAGGGGAAGCAAATGCATGCTTATACCATCAAAGTCCCCTACGGTTTCGATATATCAGTGGCTAATTCAGTTTTGGATATGTACATGAAATGTGGATTAACAGATCAGGCAGATGCACTTTTCAGAGAGATGCCTGCGAGAAATGTGGTTTCATGGACGGTTATGATAACCGGTTATGGAAAACATGGCATCGGGAAAAAGGCGGTTGAACTTTTTAGTGAAATGAAAGTGGATGGAATAGAACCTGACAGTGTGACTTACCTGGCTGTGCTAACAGCTTGCAGCCATTCTGGACTCATCAAAGAAGGTCAACAATACTTGTCTAGTTTATGTAGCAATCAGCAGATCAAACCGCAAGTAGAGCATTACGCTTGCATAGTGGATCTCCTTGGACGAGCTGGACGCATAAAGGAAGCAAAGGATCTCATTGAGAAAATGCCCTTGAAGCCGAATGTTGGTATATGGCAGACATTGCTTAGTGCTTGCAGAAAGCATGGAGACGTGGAGATGGGAAAACAAGTCGGAGAAATTCTTTTGAGATTGGATGGTAATAATCCCGTAAACTATGTTATGTTGTCAAATATATATGCAGATGCAGGACACTGGAAAGAGAGTGAGCAAATAAGAGAAACTGTGAAGAGAAAGGGACTGAAGAAAGAAGCAGGGCGTAGTTGGGTAGAGATAGACAAGGAAATCCACATTTTCTACAATGGAGATGGCAATCACCCACTTATAGAGAAAATTCACCAAGTGTTGAAAGATGTGGAGAAGAGAATGAAGGAAGAAATAGGCTATGTTCATAATGTCCATTTTGCATTGCATGATGTTGAAGAAGAGTCAAAGGTGGAGAGTTTGAGGTTTCATAGTGAGAAATTGGCTATTGGGTTGGTTTTGGTTCATGGTGGGGTGAAAAGAGAAAGGGTGGTTCAGATTTTCAAGAACTTGAGGGTTTGTGTTGATTGCCATACATTCATAAAGGGTTTGTCAAAGCTTTTGAAGATTGTATTTTTGGTTAGAGATGCAAATAGATTTCACAGATTTGAGAATGGTTTGTGTTCTTGTGGAGATTACTGGTGA 2052 0.4079 MCYTFFIGLLKKCSKNRLLNQGKQVHGVVEKLGYRCDLVLNNDLIDMYAKCGTLDFACFVFDKMPERNVVSWTALMCGHLQNGDAEASLVLFSKMGRSAVKPNEFTLSTCLKSSGILGILENGMQIHGVCAKSNFERVLVVGNSIIDMYSKCGRISEAARMFNAMPVRNLISWNSMIAAYSHERNGEEALTLFRQMQEKGEVPDDYTYSSTLKACSCLGAIGEGAQIHASLLRQGFPYLAQSTIAGALVDLYVKCSRIDEARKVFDRIEQKNVISWTTLILGYAEEDNLPEAMELFQKLRESRHKVDGFVLSSLVGVFADLALVQQGKQMHAYTIKVPYGFDISVANSVLDMYMKCGLTDQADALFREMPARNVVSWTVMITGYGKHGIGKKAVELFSEMKVDGIEPDSVTYLAVLTACSHSGLIKEGQQYLSSLCSNQQIKPQVEHYACIVDLLGRAGRIKEAKDLIEKMPLKPNVGIWQTLLSACRKHGDVEMGKQVGEILLRLDGNNPVNYVMLSNIYADAGHWKESEQIRETVKRKGLKKEAGRSWVEIDKEIHIFYNGDGNHPLIEKIHQVLKDVEKRMKEEIGYVHNVHFALHDVEEESKVESLRFHSEKLAIGLVLVHGGVKRERVVQIFKNLRVCVDCHTFIKGLSKLLKIVFLVRDANRFHRFENGLCSCGDYW* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0968 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 372 IPR002885 -
Lan15g0968 683 Pfam PPR repeat 247 273 IPR002885 -
Lan15g0968 683 Pfam PPR repeat 274 302 IPR002885 -
Lan15g0968 683 Pfam PPR repeat 448 472 IPR002885 -
Lan15g0968 683 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 8 641 - -
Lan15g0968 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Lan15g0968 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lan15g0968 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lan15g0968 683 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Lan15g0968 683 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Lan15g0968 683 TIGRFAM PPR: pentatricopeptide repeat domain 143 168 IPR002885 -
Lan15g0968 683 TIGRFAM PPR: pentatricopeptide repeat domain 347 375 IPR002885 -
Lan15g0968 683 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Lan15g0968 683 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
Lan15g0968 683 Pfam E motif 490 552 IPR046848 -
Lan15g0968 683 Gene3D Tetratricopeptide repeat domain 243 337 IPR011990 GO:0005515
Lan15g0968 683 PANTHER - 8 641 - -
Lan15g0968 683 Gene3D Tetratricopeptide repeat domain 3 116 IPR011990 GO:0005515
Lan15g0968 683 Gene3D Tetratricopeptide repeat domain 345 563 IPR011990 GO:0005515
Lan15g0968 683 Gene3D Tetratricopeptide repeat domain 117 242 IPR011990 GO:0005515
Lan15g0968 683 Pfam PPR repeat family 67 112 IPR002885 -
Lan15g0968 683 Pfam PPR repeat family 169 215 IPR002885 -
Lan15g0968 683 Pfam PPR repeat family 372 420 IPR002885 -
Lan15g0968 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Lan15g0968 683 Pfam DYW family of nucleic acid deaminases 589 683 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0968 Lan-Chr15 18952815 18956011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0968 2 683 Glycoside Hydrolase AT3G49170 36.547 1.68e-158 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0968 - - gmx:100806657 1124.77