Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0940 ATGGGTGTTGGGGTTCTATCATCGTCTTATTACCCACGATTTTCCCCTTCACTGTGGTGTGGTAGATTCAGATACTTGAAATCCCCTTGCATTCGGTGTTGTACTACTCTATCTGTTCCTACCTCTTCAGATACACAATCACTCACTCCTTCTCCTTCTGTAAAGAAAAGGGTAGTTTCGGGAGTTCAGCCCACGGGCTCAATTCACCTTGGTAACTATTTTGGCGCCATCAAAAATTGGGTTGCACTTCAGAATACATATGATACACTTTTCTTCATTGTGGACTTGCATGCAATCACATTGCCTTATGATGTACAACAATTGTCTAAGGCTACAAAGTCAACTGCAGCCATTTATCTTGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTCTTTGTACAATCTCATGTTCGAGCACATGTTGAACTGATGTGGCTGCTAAGTTCCACAACCCCGATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGGAGATGAAGAAGTTGGAGTTGCCCTTTTGACTTATCCTGTCCTGATGGCTTCTGATATACTTCTATATCAGTCTGATCTTGTTCCTGTTGGTGAAGATCAAAAACAGCATTTAGAGTTGACCCGTGACTTAGCTGAACGGGTTAATAATTTATACGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGTGGTACTATATTTAAGGTTCCAGAGCCACTTATACCTCCAGCTGGAGCCCGAATCATGTCCCTAACTGATGGCCTTTCTAAGATGTCAAAGTCTGCACCGTCTGACCAATCCAGAATCAATATTCTTGATTCTAAAGAACTTATAGCAAACAAGATCAAGAGATGCAAGACTGATTCATTTCCTGGCATGGAATTTGATAATCCTGAGAGGCCTGAATGTAACAATCTTCTATCTATATACCAACTCATTTCAGGGAAGACAAAAGAGGAAGTTGTGCAGGAATGCCAAAGCATGAACTGGGGCACATTCAAAGCTCTTTTGGCAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTACGAGGAAATCATGTCTGATTCGGGTTATTTAGATGAAGTTTTGGCAGATGGTGCTAAAACTGCAACAGAAATAGCAGATGCTACACTTCATAATGTTTACCAAGCAATGGGATTTTGCAGGAGACAGTGA 1191 0.419 MGVGVLSSSYYPRFSPSLWCGRFRYLKSPCIRCCTTLSVPTSSDTQSLTPSPSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNTYDTLFFIVDLHAITLPYDVQQLSKATKSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDSKELIANKIKRCKTDSFPGMEFDNPERPECNNLLSIYQLISGKTKEEVVQECQSMNWGTFKALLADALIDHLHPIQVRYEEIMSDSGYLDEVLADGAKTATEIADATLHNVYQAMGFCRRQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0940 396 Hamap Tryptophan--tRNA ligase [trpS]. 55 393 IPR024109 GO:0004830
Lan15g0940 396 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 64 73 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan15g0940 396 Gene3D HUPs 58 391 IPR014729 -
Lan15g0940 396 PANTHER BNAA04G15180D PROTEIN 50 392 - -
Lan15g0940 396 PRINTS Tryptophanyl-tRNA synthetase signature 68 84 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lan15g0940 396 PRINTS Tryptophanyl-tRNA synthetase signature 118 137 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lan15g0940 396 PRINTS Tryptophanyl-tRNA synthetase signature 194 215 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lan15g0940 396 PRINTS Tryptophanyl-tRNA synthetase signature 259 269 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lan15g0940 396 SUPERFAMILY Nucleotidylyl transferase 56 392 - -
Lan15g0940 396 CDD TrpRS_core 57 344 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lan15g0940 396 Pfam tRNA synthetases class I (W and Y) 56 347 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan15g0940 396 Gene3D - 252 362 - -
Lan15g0940 396 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 50 392 - -
Lan15g0940 396 TIGRFAM trpS: tryptophan--tRNA ligase 55 392 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0940 K01867 - gmx:100780447 659.448