Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0744 ATGGGTATGGATTTGCATGCCTTAGTCTGCATGCTTCGCTCTGCAAACACCATTCACCAATGCAGACAATTCCACCTCGCCTTTCTCAAAATTGGCCTTCTCAACTCCTCTCTCTCAATAAGCAACACCCTCCTTCAGCTATACACAAAATGTGGCTCTCTCCGAGATGCACACAACTTGTTCGACGAAATGCCCCAAACAAACACCTTCTCATGGAACACCCTCATCCAAGCATACCTCAACTCAGGCCACACAGACAAGTCCCTCCATTTGTTCCACTCCATGCCCTGCAAGAATCACTACTCTTGGAACATTATTGTTTCTGCTTTCGCCAAAGCTGGACACCTTGAAGTGGCTCATTCTCTGTTCAATGCCATGCCCAGTAAGAATGAAAAAGCGTGGAATTCTATGATTCATGCCTACTCTCGAAATGGGTATCCAGGAAAAGCGTTGGGAATGTTTCAAAATATGAACTTTGACCCTTTGGAAATGGTGTACAGGGATGGGTTTGTGATGGCAACTGTTCTTGGTGCTTGTGCTGATTTGTTGGCTTTAAACTGTGGGAAACAAGTTCATGCTCGTGTTTTCATTGATGGCATGGAACTTGACAAGGTCTTGTGCAGCTCATTGATTAGTTTTTATGGGAAATGTGGTGATTTAGATAGTGCTGCTAAGGTTATGAGTTTGGTGAGTGAAGTGGATGACTTCTCTGTATCGGCATTGATATCTGGTTATGCCAATACTGGAAGAATGAGAGAAGCTAGAAGGGTTTTTGATGGTAGGTTTGATCCATGTAGTGTGCTGTGGAATTCTATTATTTCGGGTTATGTGTCCAATGGTGAGGAAACGGAAGCACTTGCTCTTTTCAGCAGAATGCGTAGAGGTGGAGTTCGGGGAGATATCTCTACAATTGCAAACGTTTTGAGTGCCTGCAGTACCTTAATCATTACTGAACTAGTTAAGCAAATGCATGCACATGCTTGTAAAATTGGAGTAACTAATGACATTGTGGTCACCAGCACCCTGCTTGATGCCTACAGCAAATGTCATAGCCCTTACGAAGCTTGCAAGTTATTTAGCGAGCTCAAAGATCATGATACCATTTTGCTTAATACTATGATCACTGTTTATTCAAATTGTGGAAGAATTGAAGATGCGAAGTCCATTTTTAATACAATGCCTAGTAAGACCTTAATTTCATGGAATTCAATCTTAGTGGGACTCACTCAGAATGCTTGTCCTAGTGAAGCATTAGATATTTTTTGTCAAATGAATAGGTTGGACTTAAAAATGGATAAGTTTAGTTTTGCCAGTGTTATCAGTGCTTGTGCCAGTAAATCATCACTTGAGCTTGGTGAGCAGGTATTTGGTAAAGTTATCACCATTGGGCTTGAATCTGATGAGATCATCTCTACCTCCCTAGTTGACTTTTATTTTAAATGTGGTTTTGTTGAGATAGGGCATAAAGTTTTTTATGGAATGACAAAAACTGATGAAGTCTCATGGAATACAATGTTGATGGGTTATGCCACTAATGGATATGGAAATGAAGCACTGGCCCTCTTTAATGAAATGAGGAATGCTGGTGTGAGGCCTTCGGCTGTTACATTTACCGGGGTTCTTTCAGCTTGCGATCATTCTGGTCTGGTTGAAGAAGGAAGAAATCTTTTCCATATTATGCAACATACCTATAATATAAATCCCGGGATTGAACATTACTCTTGCATGGTTGACCTTTTGGCCCGTGCTGGTTGCTTTGGGGAAGCAATGGATCTTATGGAGGTGGTGCCTTTCGAGGTTGACGAAAACATGTGGTTGTCAGTTTTGAGAGGCTGCATAGCCCATGGAAATAAGATTCTTGGTAAGATGGCTGCAGAGCAAATTATTCGGCTTGATCCAGAAAATCCAAGTGCTTACATACAATTATCTAACATACTTGCAACTTCTGATGACTGGGAAGGATCAGCACAAGTAAGAGAGTTAATGAGAGGTAAGAATGTTCAAAAGATTCCTGGATGCAGCTGGGGAGATTGTTGA 2037 0.4148 MGMDLHALVCMLRSANTIHQCRQFHLAFLKIGLLNSSLSISNTLLQLYTKCGSLRDAHNLFDEMPQTNTFSWNTLIQAYLNSGHTDKSLHLFHSMPCKNHYSWNIIVSAFAKAGHLEVAHSLFNAMPSKNEKAWNSMIHAYSRNGYPGKALGMFQNMNFDPLEMVYRDGFVMATVLGACADLLALNCGKQVHARVFIDGMELDKVLCSSLISFYGKCGDLDSAAKVMSLVSEVDDFSVSALISGYANTGRMREARRVFDGRFDPCSVLWNSIISGYVSNGEETEALALFSRMRRGGVRGDISTIANVLSACSTLIITELVKQMHAHACKIGVTNDIVVTSTLLDAYSKCHSPYEACKLFSELKDHDTILLNTMITVYSNCGRIEDAKSIFNTMPSKTLISWNSILVGLTQNACPSEALDIFCQMNRLDLKMDKFSFASVISACASKSSLELGEQVFGKVITIGLESDEIISTSLVDFYFKCGFVEIGHKVFYGMTKTDEVSWNTMLMGYATNGYGNEALALFNEMRNAGVRPSAVTFTGVLSACDHSGLVEEGRNLFHIMQHTYNINPGIEHYSCMVDLLARAGCFGEAMDLMEVVPFEVDENMWLSVLRGCIAHGNKILGKMAAEQIIRLDPENPSAYIQLSNILATSDDWEGSAQVRELMRGKNVQKIPGCSWGDC* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0744 678 Gene3D Tetratricopeptide repeat domain 318 453 IPR011990 GO:0005515
Lan15g0744 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 98 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 572 594 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 206 227 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 133 157 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 399 427 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 101 130 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 237 259 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 70 99 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 371 396 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 340 365 IPR002885 -
Lan15g0744 678 Pfam PPR repeat 42 65 IPR002885 -
Lan15g0744 678 Gene3D Tetratricopeptide repeat domain 165 295 IPR011990 GO:0005515
Lan15g0744 678 Gene3D Tetratricopeptide repeat domain 3 164 IPR011990 GO:0005515
Lan15g0744 678 Gene3D Tetratricopeptide repeat domain 496 677 IPR011990 GO:0005515
Lan15g0744 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Lan15g0744 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Lan15g0744 678 Pfam PPR repeat family 264 311 IPR002885 -
Lan15g0744 678 Pfam PPR repeat family 498 544 IPR002885 -
Lan15g0744 678 PANTHER OS03G0849700 PROTEIN 168 678 - -
Lan15g0744 678 PANTHER OS03G0849700 PROTEIN 106 164 - -
Lan15g0744 678 PANTHER OS03G0849700 PROTEIN 8 99 - -
Lan15g0744 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Lan15g0744 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Lan15g0744 678 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Lan15g0744 678 TIGRFAM PPR: pentatricopeptide repeat domain 370 395 IPR002885 -
Lan15g0744 678 TIGRFAM PPR: pentatricopeptide repeat domain 133 157 IPR002885 -
Lan15g0744 678 TIGRFAM PPR: pentatricopeptide repeat domain 101 130 IPR002885 -
Lan15g0744 678 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Lan15g0744 678 TIGRFAM PPR: pentatricopeptide repeat domain 70 99 IPR002885 -
Lan15g0744 678 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Lan15g0744 678 Pfam E motif 615 675 IPR046848 -
Lan15g0744 678 PANTHER OS07G0578800 PROTEIN-RELATED 106 164 IPR045215 GO:0003723|GO:0009451
Lan15g0744 678 PANTHER OS07G0578800 PROTEIN-RELATED 8 99 IPR045215 GO:0003723|GO:0009451
Lan15g0744 678 PANTHER OS07G0578800 PROTEIN-RELATED 168 678 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0744 Lan-Chr15 16476597 16479476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0744 42 675 Glycoside Hydrolase AT3G49170 29.853 1.41e-101 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0744 - - gmx:100790756 1067.76