Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0707 ATGTTTCTTTCCAAAATTAGCTTAGGTAAGTTTGTATATATGGGAGTTGTGACATTTTCTAGCTCAGCTGCTCGGACTCCACTAGGATTGAATACTAAGTTTTCAAATCATTGGTCTGCATTGAAGAGACCGTTAATTGTAGCATTTAAAGGCGATAAACCCAATGACACAGCTTTGGTTGCTACCCAAGAGAAAATTCGTATGCCAATTGAATCGGCCAAGACGCAGAAGAAAAGGATAGGAAAAAGTAGTAAGTTACCGAAGAGAGTGAAAGCTGTTTGCGCTGAGGAGTCTACTCCGTCGTCCTCGGATGTGGACTACAATGAAGCTGCAGCTTTACTTGAAAATATATACAAACTCAGCCCTGCATCCGATATTTGTGATGAAGACCTTGTAGATTATAAGATCAAAAGAGTTTTGCGGAGGAGGAAGAAGATTTCTGAAGAAGATAAAGAAGAAGAATTAAGTAAGGAGAGAGTGGTCAGAAACCAGAAAAGGAAGGCCAAGCGATTGAGCCTTGATAAGAGGATTGCATTGAAGAAGAACAAAAATGAGGAGGAGGAGGTCATTCCAACCCGAAAGAAAAGAATTGTTAAGAGCAGAGTTAAGAAGATCGATGAACTCGTTAGGGAATACTCCGGGTCAACGGATTTGGGCACTCTGGACTGGAAAAAAATGAGAATTCCTCCAGTTCTTCCTTCTTCAGAGCATACTTGGTTGTTCAAGTTGATGCAACCTATGAAGGTACTTCTTCCAGTAAAAGAAGATTTGCACAAGGAGCTTGGGAGAGAACCTACAGATGGTGAACTAGCTAATGCAACAAACATGGGCATTGTTCGAGTAAAGAAAGCAATTGCAGTTGGCCGAGCTGCAAGAAACAAGATCATAATGCACAATCTCCGGCTTGTCTCGTTTGTGATCAACAAATATTTTCCAGGTTTTGCTAGTGGCCCTAAGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATCACAGCAATTGATCGTTTTGAGCCAAACAGGAAATTTCGGCTATCTACATACGGTTTGTTTTGGATTAGACATGCTATCATCCGTTCCATGACCCTCTGTAGCTTCACACGCATTCCCTTTGGACTTGAGTCGGTTATATCAGAGATCCAAAAAGCTAAACTTGAGTTAACATTTGAGCTTCAGAGGCCACCAACAGAGGAAGAAATACAAGAAAGAGTTCAGATCTCCCCTGAGAGATACCATGATGTTATAAAGGCATCGAAATCCGTTCTTTCGCTGAATTCGAGACATAGTGTCACACAGGAGGAGTTTATTAATAGGATCACTGATGATGATAGTGTTAATAGTGATAAAAGGAGGCAACCTGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCTTGAAACCCAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGTAAGGGTGACAGAACTTTGGGAGAAATTGGTAGGAACTTGAATATTTCTAGGGAAATGGTAAGAAAGCACGAAGTCAAGGCTCTGATGAAGCTCAAGCATCCGACGCGATTGGATTATCTTCGTCGCTATGTTGTATAA 1590 0.4138 MFLSKISLGKFVYMGVVTFSSSAARTPLGLNTKFSNHWSALKRPLIVAFKGDKPNDTALVATQEKIRMPIESAKTQKKRIGKSSKLPKRVKAVCAEESTPSSSDVDYNEAAALLENIYKLSPASDICDEDLVDYKIKRVLRRRKKISEEDKEEELSKERVVRNQKRKAKRLSLDKRIALKKNKNEEEEVIPTRKKRIVKSRVKKIDELVREYSGSTDLGTLDWKKMRIPPVLPSSEHTWLFKLMQPMKVLLPVKEDLHKELGREPTDGELANATNMGIVRVKKAIAVGRAARNKIIMHNLRLVSFVINKYFPGFASGPKFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTLCSFTRIPFGLESVISEIQKAKLELTFELQRPPTEEEIQERVQISPERYHDVIKASKSVLSLNSRHSVTQEEFINRITDDDSVNSDKRRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIGRNLNISREMVRKHEVKALMKLKHPTRLDYLRRYVV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0707 529 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 370 430 IPR013324 -
Lan15g0707 529 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 214 362 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 Pfam Sigma-70 region 3 378 448 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 Pfam Sigma-70, region 4 464 517 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 15 529 - -
Lan15g0707 529 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 15 529 - -
Lan15g0707 529 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 435 524 IPR013324 -
Lan15g0707 529 Coils Coil 168 188 - -
Lan15g0707 529 Pfam Sigma-70 region 2 296 361 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 Gene3D - 452 529 IPR036388 -
Lan15g0707 529 PRINTS Major sigma-70 factor signature 322 335 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 PRINTS Major sigma-70 factor signature 346 354 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 PRINTS Major sigma-70 factor signature 468 480 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 PRINTS Major sigma-70 factor signature 489 504 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 PRINTS Major sigma-70 factor signature 504 515 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 291 517 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lan15g0707 529 Gene3D - 58 365 - -
Lan15g0707 529 Gene3D - 370 445 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0707 Lan-Chr15 15798622 15802848 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0707 K03093 - gmx:100776369 734.176