Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0623 ATGTTGATTCAATTTTGGCTCAACTCTGAACTCAGCAATGTTTGCAAATCCCTGCTTAGGGTCAAGCAGTTACATGCTTTGCTTTTCAAGACATATCTCTCACAAGACCCATTTTATGCAACTAAAATTCTTAGGTTATATGCTGTTAACAATGATATTACTTCTGCATACCAATTGTTTGACAAAAGTCCCACTCGAAGTGTCTACCTTTGGAATTCCATGATTCGTGCTTTTGCCTGCTCCCGAAGATTTTCCTGCACAATCTCTCTGTTTAGGACCATGCTTGGGGGTGACATAAGTCCTGACAATTACACTTATGCTTGCGTTATACGTGCGTGCTCGGACAATTTTAATTTTGCTATGCTAAGACTTGTTCATGGCGGGTCTGTAGCTTCTGGTCTGGGATATGACCCTATTTGTTGCAGTGCACTTGTGACTGCTTATTCTAAACTTGGTTTTGTTAATGAAGCATGTAAAGTGTTTAATGGGATCGTGGAACCGGATTTGGTTTTGTGGAATTCACTGATTTCTGGTTATGGGTGCTCTGGTGCATGGGATAGAGGAATGCAAGTGTTTAGTTCAATGAGACATGAAGGGAAGAAGCCAGATGAATATACACTGGCTGGGTTGCTTGTGGGTATTGGTGATCCTAGCTTGCTGAGTATTGGTCGAGGATTACATGGTTTAATTCTAAAATGTAGACTTGATTCTGATTCTCATGTAGGTAGTTTACTGGTGAGTGTGTATTCGAGATGTAAGTGCATGCTTTCGGCATATAGAGTCTTTTGCAGTATTTTCCAACCTGATTTGGTCACATGGTCCGCTCTTATAGCTGGGTATTCCCAATCTGGGGATGATGAGAATGCACTGATCTTTTTCAGGAAATTAATCATGGAAAACAAGAAGGCGGATTCTGTTTTGATTGCCAGTGTATTAGCTTCTATAGCTCAAACAGCATATGTAGGACCAGGGTGTGAGATACATGGTTATGTTCTTCGGCATGGATTAGAATCAGATGTCAGAGTCTCCTCTGCTCTCGTGGACATGTATTCAAAATGTGGTTTCGTGCACTTAGGAATTTGTGTTTTCAGGTTAATGCCAGAACGGAACATAGTTTCTTATAATTCAGTCATTTCAGGTCTTGGCTTGAATGGATGTGCTTCTGAGGCTTTCAAGATGTTTCATAAGATTCTAGAGAAAGGATTAGTACCTGATGAAGCCACATTTTCTGCCCTTCTTTGTGCTTGTTCTCATGCTGGCCTTGTCAATGATGGCCGGGAGATTTTCCGGAGAATGAAAGATGAATTTGACATCAAACCTAAGCCCAAGCACTATGTTTACATGGTGAAGCTTCTTGGCAGTGCTGGGGAGTTAGAAGAGGCTTACAATCTCACGCAGTCCTTACCAGAACCAGTAGACAAGGCCATCCTGGGAGCCTTATTATCATGCTGTAATTCTTGTGGAAATTCTGATCTGGCAGAAATTGTAGCTCAGCAGCTTTTTAAAAACAATCCTGATGATAACGTCTACAGGGTTATGCTTTCTAATATATATGCAGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGAGATAAAGTAACAGGAGGGCTTAGAAAAATGCCGGGAATAAGCTGGATTGAAGGGAGTTTTTGTTAA 1659 0.4123 MLIQFWLNSELSNVCKSLLRVKQLHALLFKTYLSQDPFYATKILRLYAVNNDITSAYQLFDKSPTRSVYLWNSMIRAFACSRRFSCTISLFRTMLGGDISPDNYTYACVIRACSDNFNFAMLRLVHGGSVASGLGYDPICCSALVTAYSKLGFVNEACKVFNGIVEPDLVLWNSLISGYGCSGAWDRGMQVFSSMRHEGKKPDEYTLAGLLVGIGDPSLLSIGRGLHGLILKCRLDSDSHVGSLLVSVYSRCKCMLSAYRVFCSIFQPDLVTWSALIAGYSQSGDDENALIFFRKLIMENKKADSVLIASVLASIAQTAYVGPGCEIHGYVLRHGLESDVRVSSALVDMYSKCGFVHLGICVFRLMPERNIVSYNSVISGLGLNGCASEAFKMFHKILEKGLVPDEATFSALLCACSHAGLVNDGREIFRRMKDEFDIKPKPKHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNSCGNSDLAEIVAQQLFKNNPDDNVYRVMLSNIYAGDGRWDDVKKLRDKVTGGLRKMPGISWIEGSFC* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0623 552 Gene3D Tetratricopeptide repeat domain 326 422 IPR011990 GO:0005515
Lan15g0623 552 Gene3D Tetratricopeptide repeat domain 226 321 IPR011990 GO:0005515
Lan15g0623 552 Gene3D Tetratricopeptide repeat domain 7 123 IPR011990 GO:0005515
Lan15g0623 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Lan15g0623 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Lan15g0623 552 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Lan15g0623 552 TIGRFAM PPR: pentatricopeptide repeat domain 408 440 IPR002885 -
Lan15g0623 552 TIGRFAM PPR: pentatricopeptide repeat domain 69 102 IPR002885 -
Lan15g0623 552 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Lan15g0623 552 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 548 - -
Lan15g0623 552 Pfam E motif 489 548 IPR046848 -
Lan15g0623 552 Pfam PPR repeat family 369 417 IPR002885 -
Lan15g0623 552 Pfam PPR repeat family 167 210 IPR002885 -
Lan15g0623 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 435 IPR002885 -
Lan15g0623 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Lan15g0623 552 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Lan15g0623 552 Pfam PPR repeat 271 298 IPR002885 -
Lan15g0623 552 Pfam PPR repeat 140 163 IPR002885 -
Lan15g0623 552 Pfam PPR repeat 70 95 IPR002885 -
Lan15g0623 552 PANTHER OS01G0545900 PROTEIN 5 548 - -
Lan15g0623 552 Gene3D Tetratricopeptide repeat domain 124 216 IPR011990 GO:0005515
Lan15g0623 552 Gene3D Tetratricopeptide repeat domain 423 546 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0623 Lan-Chr15 14144727 14148697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0623 51 548 Glycoside Hydrolase AT3G49170 30.495 1.12e-74 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0623 - - gmx:100820049 879.396