Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0417 ATGCTGAAGTTGAATTTGTGGCACGAACCATTCATGAAACACTTGAAATGGTTAAACCCTTTGGCTAATGTTCCCTTGTCCAAGTGGCATCTCAAAGCTGAATTCCACAATAGCCTGAAGCCACCAAGGCCAAATCAGACCCTCAAAAAGTACCTTGAATGCAACAACCAAACCAAGGTCCTTCTATACTTCAGATACTTACTTAGAGAAAGATCATCTTTTAATTCTATTGACAGCTTTTCTTTCCTATTTGCTCTAAAAGCCTGCAATAAGAAACATAGCTCCTCCGAAGGAAAACAATTGCATTGCCTCGTACTGAAATTTGGGTTCCAATACGTAGTTCAACTTCAGACATTGCTTCTGAAATTGTATGCTGAATGGGAGAATCTGTGTGAAGCACACCAGATGTTTGATGAAATACCCGATAAGAATATTATATGCTGGACCTCTTTAATATCTGCTTATGTTGACAATCACAAACCAAACAAAGCTTTAGAAGTGTTCAGGCTGATGCAGATGAACAATGTTGAACCTGATCAAGTCACGGTAACGGTTGCTCTCTCTGCTTGTGCTGATACCGGGGCACTGGAAATGGGTGAAAGGATCCATGCTTTCGTTCGGAGTAAACAAGGTATGAAAAAGGATTTGTGCTTGACTAATGCTCTCATTAATATGTATGCCAAATGTGGGGATATTGTAACTTCTAGGAGGTTGTTTGATAGCACAAAGAACAAAGATGTCACAACTTGGACTTCCATGATTGTGGGGCATGCACTGCATGGGCAAGCACATGAGGCTCTTCAAATTTTTGAAGAAATGAACACAAGGAGTGAGAAGAAAAACTTGAATTCCTGCAGCTATCTCGTAACCCCGAATGATGTGACATTCATAGGAGTTTTAATGGCTTGCAGCCATGCAGGGTTGGTTGAGAAAGGCAAAGGCCATTTCAGAAGTATGACTGAAGATTATGGTATACAGCCGAGAGAGCCTCACTTCGGCTGCATGGTAGATCTTTTCTGCAGAGCAGGGCATCTGAGAGATGCTTATGACTTCATTATGCAGATGCCGACGCCACCAAAAGCGGTAATCTGGCGAACCTTGCTGGGGGCATGCAGCCTGCATGGTGAATTAGAGCTCGGTGCAGAAGTGAGGCATAAGCTGCTAAAGTTGGACCCTGGTTATGTAAGTGACAGTGTTGCTATGTCTAATATTTATGCAGATATAGGCATGTGGGATAAGAAGGTGATTGCTAGGAATCAGATAAAACAGTCAAGAGCTCCTGGTTGCAGCTCAATTGAGGTGGGAAGTAGACTTAGTGAATGTGTGACCACAGATTATAATCATCCTGTAAAGACAAATATCATATGTTCTTGA 1374 0.4199 MLKLNLWHEPFMKHLKWLNPLANVPLSKWHLKAEFHNSLKPPRPNQTLKKYLECNNQTKVLLYFRYLLRERSSFNSIDSFSFLFALKACNKKHSSSEGKQLHCLVLKFGFQYVVQLQTLLLKLYAEWENLCEAHQMFDEIPDKNIICWTSLISAYVDNHKPNKALEVFRLMQMNNVEPDQVTVTVALSACADTGALEMGERIHAFVRSKQGMKKDLCLTNALINMYAKCGDIVTSRRLFDSTKNKDVTTWTSMIVGHALHGQAHEALQIFEEMNTRSEKKNLNSCSYLVTPNDVTFIGVLMACSHAGLVEKGKGHFRSMTEDYGIQPREPHFGCMVDLFCRAGHLRDAYDFIMQMPTPPKAVIWRTLLGACSLHGELELGAEVRHKLLKLDPGYVSDSVAMSNIYADIGMWDKKVIARNQIKQSRAPGCSSIEVGSRLSECVTTDYNHPVKTNIICS* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0417 457 PANTHER - 43 146 - -
Lan15g0417 457 PANTHER - 114 455 - -
Lan15g0417 457 Pfam PPR repeat family 143 191 IPR002885 -
Lan15g0417 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Lan15g0417 457 TIGRFAM PPR: pentatricopeptide repeat domain 249 275 IPR002885 -
Lan15g0417 457 TIGRFAM PPR: pentatricopeptide repeat domain 146 179 IPR002885 -
Lan15g0417 457 Pfam PPR repeat 220 245 IPR002885 -
Lan15g0417 457 Pfam PPR repeat 332 355 IPR002885 -
Lan15g0417 457 Pfam PPR repeat 249 274 IPR002885 -
Lan15g0417 457 Gene3D Tetratricopeptide repeat domain 44 210 IPR011990 GO:0005515
Lan15g0417 457 Gene3D Tetratricopeptide repeat domain 287 435 IPR011990 GO:0005515
Lan15g0417 457 Gene3D Tetratricopeptide repeat domain 211 286 IPR011990 GO:0005515
Lan15g0417 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Lan15g0417 457 PANTHER - 114 455 - -
Lan15g0417 457 PANTHER - 43 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0417 Lan-Chr15 8873604 8875611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0417 80 449 Glycoside Hydrolase AT3G49170 35.121 6.91e-74 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0417 - - lang:109327537 944.88