Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0368 ATGGCTTGTCTTCCCATCACACCCAACACAACCTCAACACTTCCCCATTGCATACCCCAGACCACTACAAACACTCCCAACTCTTACAAATTCCACTTCAACCAAATCTCTTCCCTCTGCAAAGATGGCCAAATCCGCAACGCCGTTCTCTCCCTCGCCGAAATGGAATCAAAAAACTTCCACACAGGACCTGACATTTATGGAGAGCTTCTCCAAGGATGCGTTTACCAAAGAGCTCTTCCACTTGGCCTTCAAATTCACGCGCAAATCATTAAAAGAGGTAAACCCTTCACCACAAACGAGTACATTGATACCAAGTTGGTTATTCTCTATGCCAAATGTGGTGTAGGGGAGGTGGCAAATAGAATCTTTCGCGGGTTGGGAAAGAAGAATGTTTTCTCTTGGGCTGCCATTATTGGAATGCAGGCTCGAAGCTGTTGCTGCGAGGAAGCTCTGTTGAGTTATGTTGAAATGCAAGAGAATGGGTTGTTGCCTGATAACTTTGTTGTCCCTAATGCTTTGAAGGCTTGTGGGGTTCTTGGGTGGGTTGGGTTTGGGAAGGGAATTCATGGGTATGTTGCGAAGATGAATGGTTTCGATGGGTGTGTTTTCGTTGCGAGTAGTCTTGTTGATATGTATGGGAAATGTGGGGTTTTGGAGGATGCAGAAAGAGTGTTTGATGGTATGATTGAAAAGAACAATATATCGTGGAATTCGATGATTGTGGCTTACGCACAAAATGGGATGAACAAGGAAGCAATTAGCCTCTTTCGGAAAATGAGATTTGAGGGTATTGAACCAACTCCGGTTACTTTGTCGGGTTACTTTTCAGCGTGTGCTAATTTGGAGGCTATCATGGAAGGAAGGCAAGGACATGGACTTGTGGTCTTAGGAGGAATGGAGTTAAATAATGTTTTGGGTAGCTCCATTATGAACTTTTATTCTAAAGTTGGTTTGGTTGAGGAGACTGAGCTAGTTTTTAGAAAAATGGTCATGAAAGATGTGGTGACATGGAATTTGATTATATCTAGTTATGTGCAATTTGGGCAGATTGATAAGGCACTTGAGATGTGCCATTGGATGAGAGAAGAAAAATTGAGATTTGACAGTGTGACACTCTCATCTTTATTGACTGCTGCTGCAGATACAAGGGATATAGGATTTGGCATGAAGGGACACAGCTATTGCATTAAAAACAATTTTGATTGTGATGTGGTTGTCTTGAGTGGCATCATAGATATGTATGCCAAATGTGGAAAAATGGATTATGCAAGAAAAGTTTTTAGTCGTGTAATAAAAAAAGATATTGTGCTGTGGAATACAATGTTGGCCGCTTTTGCAGAGCATGGTTTGAGTGGCGAGGCCTTGAGATTGTTCTTTCAAATGCAGCTGGAGAGCATTCCACCGAATGTATTGTCATGGAACTCTGTGATCCTCAGTTTCTTTAGAAATGGTCAAGTTATCGAGGCTCAAAACATGTTTTCAGAAATGTACTCCTCAGGTGTTAAGCATAATGTGATTACATGGACTACTTTGATATCTGGTCTGGCTCAGAATGGTCTTGGTTATGAAGCTATTCAGGTTTTCCGGCAAATGCAGGTAGAAGGAGTTGAACCTAATAGTTTAAGCATAACTTCTGCACTCTCAGCATGCATAAATATGGCATTGCTAAAATATGGAAGGGCAATTCATGGGTATGTTATGAGGCATGATATGTCTCTCTGTCTTTATATCACAACCTCTATAATGGACATGTATGCTAAATGTGGAGCTTTGAATAATACAAAGTTTGTTTTCAACATGTGTTCAACAAAGGAAATGCCTTTATACAATACGATGATATCTGCTTATGCAAGGCATGGTCAAGCTATAGAAGCCCTTGCACTTTTTAAGCAAATGGAGAAAGAAGGTATAGTGCCAGATCACATAACTCTTACTTCTGTCTTGTCAGCATGCTGCCATGGGAGATTGGTGAGAGAGGGTCTAGAGGTTTTCAAATATATGATCTCTGAGCTCCAAATGAAGCCAAGTAAGGAACACCTGGGTTGTTTAATTAAACTTCTTGCTAATGATGGCCAATTGGATGAAGCGGTTCGGATTCTTTTGACAATTCCAAGTGATCCAGATGCACATATATTAGGATCTCTCCTTGCAGCTTGTGGACAAAACCATGATATTGAACTCGCAGGTTATATAGCAAAGTGGTTATTGAAATTGGAGCCAAATAATTCAGGAAATTATGTAGCTCTGTCAAATGTGTATGCAAGTGTAGGCAAATGGGATAAAGTATCAAACATTAGGGGCTTGATGAAAGAAAAGGGCCTAAGAAAGATTCCTGGGTGTAGCTGGATTGAAGTTGGACAAGAACTTCATGTATTTATTGCTAGCGACAAATCACATGCTGAAACAGAGGAGATTTATATGATATTGCATTTGTTGGGATTTGATATGCATTACGCAAAATATGCCCCTTATAGTACTGAACCAACTCCCGCTTCTTTTAATATAAGGTCTTGA 2517 0.4052 MACLPITPNTTSTLPHCIPQTTTNTPNSYKFHFNQISSLCKDGQIRNAVLSLAEMESKNFHTGPDIYGELLQGCVYQRALPLGLQIHAQIIKRGKPFTTNEYIDTKLVILYAKCGVGEVANRIFRGLGKKNVFSWAAIIGMQARSCCCEEALLSYVEMQENGLLPDNFVVPNALKACGVLGWVGFGKGIHGYVAKMNGFDGCVFVASSLVDMYGKCGVLEDAERVFDGMIEKNNISWNSMIVAYAQNGMNKEAISLFRKMRFEGIEPTPVTLSGYFSACANLEAIMEGRQGHGLVVLGGMELNNVLGSSIMNFYSKVGLVEETELVFRKMVMKDVVTWNLIISSYVQFGQIDKALEMCHWMREEKLRFDSVTLSSLLTAAADTRDIGFGMKGHSYCIKNNFDCDVVVLSGIIDMYAKCGKMDYARKVFSRVIKKDIVLWNTMLAAFAEHGLSGEALRLFFQMQLESIPPNVLSWNSVILSFFRNGQVIEAQNMFSEMYSSGVKHNVITWTTLISGLAQNGLGYEAIQVFRQMQVEGVEPNSLSITSALSACINMALLKYGRAIHGYVMRHDMSLCLYITTSIMDMYAKCGALNNTKFVFNMCSTKEMPLYNTMISAYARHGQAIEALALFKQMEKEGIVPDHITLTSVLSACCHGRLVREGLEVFKYMISELQMKPSKEHLGCLIKLLANDGQLDEAVRILLTIPSDPDAHILGSLLAACGQNHDIELAGYIAKWLLKLEPNNSGNYVALSNVYASVGKWDKVSNIRGLMKEKGLRKIPGCSWIEVGQELHVFIASDKSHAETEEIYMILHLLGFDMHYAKYAPYSTEPTPASFNIRS* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0368 838 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 333 381 - -
Lan15g0368 838 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 516 806 - -
Lan15g0368 838 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 332 - -
Lan15g0368 838 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 349 520 - -
Lan15g0368 838 Gene3D Tetratricopeptide repeat domain 578 806 IPR011990 GO:0005515
Lan15g0368 838 Gene3D Tetratricopeptide repeat domain 33 193 IPR011990 GO:0005515
Lan15g0368 838 Gene3D Tetratricopeptide repeat domain 386 467 IPR011990 GO:0005515
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 437 471 IPR002885 -
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 643 671 IPR002885 -
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 207 232 IPR002885 -
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 507 540 IPR002885 -
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 473 505 IPR002885 -
Lan15g0368 838 TIGRFAM PPR: pentatricopeptide repeat domain 610 641 IPR002885 -
Lan15g0368 838 PANTHER OS07G0578800 PROTEIN-RELATED 333 381 IPR045215 GO:0003723|GO:0009451
Lan15g0368 838 PANTHER OS07G0578800 PROTEIN-RELATED 516 806 IPR045215 GO:0003723|GO:0009451
Lan15g0368 838 PANTHER OS07G0578800 PROTEIN-RELATED 349 520 IPR045215 GO:0003723|GO:0009451
Lan15g0368 838 PANTHER OS07G0578800 PROTEIN-RELATED 30 332 IPR045215 GO:0003723|GO:0009451
Lan15g0368 838 Gene3D Tetratricopeptide repeat domain 468 564 IPR011990 GO:0005515
Lan15g0368 838 Gene3D Tetratricopeptide repeat domain 194 290 IPR011990 GO:0005515
Lan15g0368 838 Gene3D Tetratricopeptide repeat domain 291 385 IPR011990 GO:0005515
Lan15g0368 838 SUPERFAMILY TPR-like 411 763 IPR011990 GO:0005515
Lan15g0368 838 Pfam PPR repeat 409 435 IPR002885 -
Lan15g0368 838 Pfam PPR repeat 437 464 IPR002885 -
Lan15g0368 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Lan15g0368 838 Pfam PPR repeat family 469 517 IPR002885 -
Lan15g0368 838 Pfam PPR repeat family 232 281 IPR002885 -
Lan15g0368 838 Pfam PPR repeat family 333 379 IPR002885 -
Lan15g0368 838 Pfam PPR repeat family 610 654 IPR002885 -
Lan15g0368 838 Pfam E motif 725 785 IPR046848 -
Lan15g0368 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Lan15g0368 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Lan15g0368 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Lan15g0368 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Lan15g0368 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0368 Lan-Chr15 6961893 6964505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0368 158 824 Glycoside Hydrolase AT3G49170 28.892 1.26e-96 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0368 - - cam:101507631 1219.14