Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0011 ATGGAAGCAGTGAGCGCGTGGGGTAACACACCACTAGCTAGCATTGATCCCGAGATCCATGACCTGATAGAGCACGAAAAACATCGACAATGCCGTGGAATAGAACTAATTGCATCAGAGAACTTCACCTCATTCGCAGTCATCGAAGCCTTAGGAAGTGCTTTAACCAACAAGTACTCCGAGGGAATGCCAGGTAACCGTTACTACGGTGGGAACGAGTTCATTGACCAGATCGAAAACCTCTGTCGCTCACGCGCCCTCCAGGCGTTTCACCTCGACGCCCAATCTTGGGGTGTCAATGTTCAACCGTATTCGGGTTCTCCGGCCAATTTCGCAGCGTATACGGCGGTGCTTCAGCCTCATGATAGGATCATGGGTTTGGATCTCCCATCTGGTGGACACTTGACTCATGGGTATTATACATCTGGTGGGAAGAAGATATCAGCGACTTCAATTTACTTTGAGAGTTTGCCTTATAAGGTGAATTCGAGTACAGGGTATATTGATTATGATAGGTTGGAGGAGAAGGCCTTGGATTTTAGGCCAAAGTTGATTATTTGTGGTGGTAGTGCTTATCCTAGGGACTGGGATTATGCCAAGATTAGAGCCGTTGCTGATAAGTGTGGTGCACTCATGCTCTGTGACATGGCTCACATTAGTGGCCTTGTTGCTGCTCAGGAAGCTAATAACCCATTTGAGTACTGTGACATTGTGACAACAACAACCCACAAGAGCTTGAGGGGTCCTAGGGCCGGTATGATCTTCTACCGGAAGGGACCTAAACCACCCAAGAAGGGACAGCCTGAGAATGCAGTTTATGATTTTGAAGACAAAATCAACTTTGCTGTCTTCCCTTCCCTTCAGGGTGGTCCTCACAATCACCAGATTGGTGCTCTTGCTGTCGCTTTGAAACAGGCCACGACACCTGGATTCAAAGCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCCCTTGGAAATTTCTTGATAAGCAAGGGATACAGTCTTGTCACCGGAGGAACTGAGAACCATCTTGTCCTGTGGGATCTCCGCCCTCTTGGCTTAACCGGTAATAAGGTAGAGAAACTTTGTGATCTCTGTAACATTACTGTGAACAAAAATGCTGTTTTTGGTGATAGCAGTGCCTTGGCTCCCGGAGGAGTACGAATTGGTACCCCAGCCATGACTTCAAGAGGCTTGGTTGAGAAGGACTTTGAGCAAATTGGTGAGTTCCTTCATCGTGCCGTAGCTCTCACACTAGAAATCCAGAAAGAGTATGGCAAACTTTTGAAGGATTTCAACAAGGGCTTGGTGAACAACAAGGCTATTGAAGGTCTCAAAGCTGATGTTGAAAAATTTTCAGCCTCATTTGATATGCCTGGCTTCCTTGTATCAGAGATGAAGTACAAGGACTGA 1416 0.4682 MEAVSAWGNTPLASIDPEIHDLIEHEKHRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALQAFHLDAQSWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDRLEEKALDFRPKLIICGGSAYPRDWDYAKIRAVADKCGALMLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQATTPGFKAYAKQVKANAVALGNFLISKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLVEKDFEQIGEFLHRAVALTLEIQKEYGKLLKDFNKGLVNNKAIEGLKADVEKFSASFDMPGFLVSEMKYKD* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0011 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 - -
Lan15g0011 471 Gene3D - 41 316 IPR015421 GO:0003824
Lan15g0011 471 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 1 470 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lan15g0011 471 SUPERFAMILY PLP-dependent transferases 4 463 IPR015424 -
Lan15g0011 471 PIRSF SHMT 1 466 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lan15g0011 471 Hamap Serine hydroxymethyltransferase [glyA]. 11 461 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Lan15g0011 471 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 236 252 IPR019798 GO:0030170
Lan15g0011 471 Pfam Serine hydroxymethyltransferase 13 411 IPR039429 -
Lan15g0011 471 Gene3D Aspartate Aminotransferase, domain 1 16 460 IPR015422 GO:0003824
Lan15g0011 471 CDD SHMT 16 416 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0011 Lan-Chr15 91395 115616 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0011 K00600 - gmx:100815417 904.049