Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0008 ATGGATTTGGTGGAATTAGAGGAAGTAGAAGGGCTACGATGGTCATGGAACTCATGGGCAGTTACGCGGAAATCAGAAGAAAGTTTGATAATTCCATTAAGCATCATGTGCAGTCCTTTAAGCAAGAGGAATGACCTAATCCCATTCCTTTCTTACGATCCACTCTTATGTTCTGTATGCGGTGCCGTTTTGAACCCTTACGCTCGCCTGGACTACCAGTCTCGCATCTGGCACTGCCCTTTCTGTTTCAATCGCAACCCTTTCCCACGCTCTATTCATCATACCAGCCTCCCCGCTGAGCTATTCCCTACATACAGTTCTGTTCAATATCTCAATCTCCAAAGTAGTACTACTACTACTACTACTACTACTCCTGCTCCTGCCTTTGTCTTTCTTGTTGATATGTCTTCCTCTCAAGATGAAATTCTTTCACTTAAGAATGAATTGTTATTTGTGTTGGATCAGTTGCCAGATAATGTCTTGGTTGCTTTGCTTACTTTTGATTCTAATGTTTATATCCATGATCTTGCTTATTCCCAATGTTCTAGGGTTCTTATGCTTCATGGTCACCGCCAACTTTCCTATCATCAGACTCGGCAGTTTCTCAACATTACCCACACACATCAGCAGCAGCAGCAGCAGCAGGGTTTTCTGTTGCCAATCTCAGAATGTGAATTCAATATCACTTCTGCTATTGAAGACATTCATTCTACATCCAACGTTTCATCAGCCACTCGCCCACTCAGGTCCACCGGAGCTGCAATATCAGCTGCCCTTGGACTTCTAGAGTCTTGCGCAATCAATACCGGTTCCAGAATCATGCTCTTCACATCTGGACCTTGTACTGTAGGACCAGGAGCTGTTGTAGGATCTGATTTTTCCCATTCCATGAGAACCCACCAGGATATCATCAATGGCAATGCCCAGGCAAGACATCATCACAAATCCTGTGCTTTCTACAAGCAAGTCTCCAACCGCCTATCTGATGCCTCTGTTGTTCTTGATCTCTTTGCTTGTTCCCTTGACCAAGTCGGAGCAGCCGAGCTAAGAGACCCGGTTGAGCATTCCGGTGGACTTATGATTCTCGCCGACTCTTTTGAATCAGATCAGTTCAGGAAATGTCTCAGGCACTTATTTAAACGTGATGATGATGGCTACTTGAAGATGAATTTTGATGCAACTATTGAAGTAGTGACCACCAAAGATGTCAAAATCTGCGGAGCTCTTGGTCCTTGTGTGTCTCTTAGAAAAAAGAACAGTTTAGTGAGTCAGACTGAGGTTGGAGAAGGTGGTACCTACATGTGGAAGTTAAATACACTGACTGACAAAACTTGCATTGCTTTTTTCTTCGAAGTGAATGATGAACATAAAATTCAACCCGGATCTGCGTTTTTAATTCAATTCATAACACGATACAGACAAGGGAACATGATGGGACTGAGAAAAAGAGTGACAACCGCTGCAAGACGATGGGTCGGGGATCATTCCACTGACATTGCTGCTGGGTTTGATCAAGAAGCTGCAGCTTCTGTTATGGCAAGGCTTGCCATTCTCCGAGCTGAAACATGCTATGCCCGTGATGTTATTAGATGGCTGGATGACACACTTATCCACTTTGCTTCCAAGTTTGGGGACTATGTGCCTGAAGACCCTTCTACCTTTCGCCTATCCACCAACTTTTCCCTTTATCCTCAGTTCATGTTCCACTTTAGACGATCTCAATTCATAGATGTCTGTAACACCACTCCAGATGAAACTGCATTTTTCCGGCTTATGCTGAACCGTGAAGGAGTCGTCGGCTCTCTGATCATGATTCAACCTACGCTTTTCCAGTATTCTTTTGATGGGCCACCTGTTCCAGTACTTCTAGATATTCGTTCCATTTCTCCAGATTTTATCCTGCTCTTCGATTCTTACTTCCATGTGGTGATTCATTATGGGTCCAAGATTGCTCAGTGGAGAAAACTTGGTTACGATAAGGATCCAAATCATGAGAACTTTAGAAAACTGTTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTGGCTGATCGGGTTCCAGTGCCGAAGATTATAATATGTGACCAACATAGTAGTCAGGCAAGGTTTCTTCTTGCTAAGTTGAATCCATCTGTTACTCAAAATTCAACATACACAGAAGGTTCTGATATTATCATTACTGATGACTTGAGCTTGCAAGTTTTTTTAGATCACTTGCAGGTACTTGCAGTGCAAGGCTGA 2241 0.4351 MDLVELEEVEGLRWSWNSWAVTRKSEESLIIPLSIMCSPLSKRNDLIPFLSYDPLLCSVCGAVLNPYARLDYQSRIWHCPFCFNRNPFPRSIHHTSLPAELFPTYSSVQYLNLQSSTTTTTTTTPAPAFVFLVDMSSSQDEILSLKNELLFVLDQLPDNVLVALLTFDSNVYIHDLAYSQCSRVLMLHGHRQLSYHQTRQFLNITHTHQQQQQQQGFLLPISECEFNITSAIEDIHSTSNVSSATRPLRSTGAAISAALGLLESCAINTGSRIMLFTSGPCTVGPGAVVGSDFSHSMRTHQDIINGNAQARHHHKSCAFYKQVSNRLSDASVVLDLFACSLDQVGAAELRDPVEHSGGLMILADSFESDQFRKCLRHLFKRDDDGYLKMNFDATIEVVTTKDVKICGALGPCVSLRKKNSLVSQTEVGEGGTYMWKLNTLTDKTCIAFFFEVNDEHKIQPGSAFLIQFITRYRQGNMMGLRKRVTTAARRWVGDHSTDIAAGFDQEAAASVMARLAILRAETCYARDVIRWLDDTLIHFASKFGDYVPEDPSTFRLSTNFSLYPQFMFHFRRSQFIDVCNTTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDFILLFDSYFHVVIHYGSKIAQWRKLGYDKDPNHENFRKLLEAPELDAEQLVADRVPVPKIIICDQHSSQARFLLAKLNPSVTQNSTYTEGSDIIITDDLSLQVFLDHLQVLAVQG* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0008 746 Gene3D - 6 489 - -
Lan15g0008 746 Pfam Sec23/Sec24 trunk domain 126 381 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lan15g0008 746 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 746 IPR037364 -
Lan15g0008 746 Gene3D von Willebrand factor, type A domain 126 389 IPR036465 -
Lan15g0008 746 Pfam Sec23/Sec24 helical domain 504 600 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lan15g0008 746 Pfam Sec23/Sec24 beta-sandwich domain 391 492 IPR012990 -
Lan15g0008 746 CDD Sec23_C 596 716 IPR037550 GO:0030127|GO:0090114
Lan15g0008 746 Pfam Gelsolin repeat 618 704 IPR007123 -
Lan15g0008 746 Gene3D Sec23/Sec24 helical domain 501 743 - -
Lan15g0008 746 SUPERFAMILY beta-sandwich domain of Sec23/24 2 503 - -
Lan15g0008 746 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 607 745 IPR036180 -
Lan15g0008 746 Gene3D - 51 107 - -
Lan15g0008 746 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 746 - -
Lan15g0008 746 SUPERFAMILY Zn-finger domain of Sec23/24 46 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan15g0008 746 SUPERFAMILY Helical domain of Sec23/24 504 606 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lan15g0008 746 Pfam Sec23/Sec24 zinc finger 54 90 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lan15g0008 746 SUPERFAMILY vWA-like 127 381 IPR036465 -
Lan15g0008 746 Gene3D Severin 606 710 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0008 Lan-Chr15 61312 64086 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0008 K14006 - gmx:100784000 1106.28