Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0004 ATGGGGAAGAAAGTGAGAAAGAAGAGCCGTATTGCGGTTAAGGACAAGGAGATTACTACTGGCTCTGTTTCTGTTTCTGTTACAAAAGACACAAATAATTCTTGCCCTCATCTTCTCAGAGGTGTTAATTTGAATACATTATCTACTAAGATCGCCTCTTCTTCTCAAGTAAGGTGTGAAGATTGTGCTGAAAGGAGAGGTAATAAAGGAAAAGGTAAACATGCCAAGAACAAAGCCTCTTCAGATTCAAAATCAGACTCTAAGGCTATATGGGTTTGTTTGGACTGTGCTCAATTTACCTGTGGAGGTGTTGGGCTGCCCACATCTTCTCAATGCCATGCGGGCAGGCATGCCAGTCTAACTCGCCACCCTTTGGCCATTCATCTTGAAAAACCTCAATTATGTTGGTGTTTTCATTGCAAAATGCCTATTCAACTTGATAGATTAGAAGAGACTGATGAAGCAAGCCGTCTTCTGTCTGGTGCTGTCAAGTTGTTGAAAGGACGGCCGTCGGGGAAAACACCCCTGGATACTGAGGATGTTCATATTGGTGATGGCAGTGTTACTTCAGAAATTAAATCAAAAATTCTGTTCACAACAACTAACTCATATGTACAAGGTGGTTATGTAGCCAGAGGTATGGTTAATCTTGGGAATACTTGCTTCTTCAATTCAATCATGCAAGTTCTGTTAGCTATGAATAAATTGCGCAATAACTTTCTGAACTTTGATGCTCCTGTTGAGGGGGCACTGACTAGTTCCTTGAAGAAACTGTTCAATGAAACAAATCCAGAATCAGGATTGAGAAACAATATAAATCCTAGATCCTTTTTTGGTTGTGTATGTTCTAAGTATCCACAGTTTCGAGGATATCAGCAGCATGACAGTCATGAATATCTCCGTTGTTTACTGGATGGGTTGAGTACTGAAGAACTAGCTGCAAGGAAACAGAATGGTTCTCCCAAGAAAGATGGGACCACTCCTAATAATACTCTAGTTGATGCTTTATTTGGGGGTCAGATATCTAGTACTGTGTGTTGCATTGACTGTGGCCATTTCTCAACCGTGTATGAGCCGTTTTTAGATCTTTCCCTTCCTGTCCCAACTAAGAAGCCTCCACCTAGGAAGGCTCAACATGTATCTCGAACCAAAAAATCAAAACTTCCACCGAAAAAGGGTGGTAAGACTCGATACAAAGGTAACAAGGATGCAAGTCCCTTACCTGTCCAAAGCCTATTGAAACAGTCACCCAGCCATGTATCATCCTGCCCTGCTCAGTCAAATATATCATCAGTTGCTGGAGAGATGTTGGGTTCTTCTGCTGATTCTTCTGTACTAGGTTCTGGAGAAGTAAGCAGCATGGCTGATAAACAGAACTCATCTTCACCTAATTCGGTTGCTGTTGAAGAGTCTCAGCATACACTGCAGGTGCTTGACAATGCTACGGAGGAAACATTAGCTTCAGCGGATGATTTCACATGGTTGGATTTTGTGGAAGCTGGAACCGTGGTAGATGAAGGTGATTCCATTTCCCAGAAGGAAGATACTCCGGAGGTACATGAGACTAAGAATAATAATGAATGTTTAAAAGAGTTACATGTACAGGCGGCTAGCTGTGAATCTAGTGGTTCATTTTGTTTTCTTAAGGATGAGGAGGACCAAAACCTAAGACCCGATTCTTCTTCAGCAAATAGGTGGGAAGATGAGGTTCCATTACAAGTTCAAGGTTCAGAAGTGCTGTTACTTCCGTATAAGGAAGAAAGTTCCTCTGCTGCTGAGATCACCGGAGACGACCGTGAGGCCTCCTCGTCTGTTTTAGGCTGTGCTCAAGAAGAAATAGAGTTTGATGGACTTGGTGACTTATTCGATGAGCCTGAAACAGTTTTTGCTGGGCCTGCTCCTAGACCTTCTTCAAGTGGTGGGGTCAAGGAAGCTGGTTTTATTGTTGGAAACAACAACAGCGAGTCTGATCCAGATGAAGTAGATGATGCAGATACTCCGGTCTCCGTAGAGAGTTGCTTGGCACATTTTATAAAACCTGAGCTTCTCTCAGATGATAATGCTTGGCATTGTGAGAACTGTTCTAAAACTCACCGTCAAAAGATGGAAACATATACACAGGCAAAAAATGCATCCGATGGAAATGAGACCAGATGTCACAATGAACCAGGGTATGCAGCTTGTTCTGTTAAAGTTGGAGGTATTGGTAATGGGGATATGGGAAATGAAAAAAATGTAGAAAGTTCGGTTTCTCATGTTAAACTTGACACAAAACTTGAAAGTGGCCAAATAGACGAGTTGAATACAAATACTAATGATAGGGATCATGGGACATTAGGGATGAAAGATAATGAGGAATTACAATCATCAGGTTCTCATAAAGCTTGCAATGAAGAAAGTTGTGACCGTCCACCTGCTGATTCTTGTACTACATTACATATGATTGGAACTGTCCAAAAAGGTGATACTCAGATGTTAGGTCAAGATAACAATGATTCAGATGAATGCAGTGAGGAAGAGGCCAGCTCCGAAAGTGTGAAAGTGAAGAGGGATGCTACTAAGAGGGTCCTCATTTATAAAGCTCCACCTGTTTTGACCATTCATTTAAAGAGATTCAGCCAAGACGCTCGTGGTCGCTTAAGTAAATTAAATGGTCACGTCAGCTTCAGAGAAAGAATGGATCTCAGACCATATATGAATCCCGGGTGCATAAGTGAAGAGAACTATGAATACAATTTGGTTGGTGTAGTGGAGCACTCAGGAAGTATGAGAGGGGGTCACTATGTTGCATATGTGAGAGGAGGCCAGAGGAACAGAGGGAAGGCTGATAAAGAGGTTGAGGGTTCCACATGGTATCATGCCAGTGATGCATATGTACGTGAAGTTTCTTTCAATGAAGTTCTTCGCTGTGAGGCGTACATTTTATTCTATGAAAAAAATTGA 2943 0.419 MGKKVRKKSRIAVKDKEITTGSVSVSVTKDTNNSCPHLLRGVNLNTLSTKIASSSQVRCEDCAERRGNKGKGKHAKNKASSDSKSDSKAIWVCLDCAQFTCGGVGLPTSSQCHAGRHASLTRHPLAIHLEKPQLCWCFHCKMPIQLDRLEETDEASRLLSGAVKLLKGRPSGKTPLDTEDVHIGDGSVTSEIKSKILFTTTNSYVQGGYVARGMVNLGNTCFFNSIMQVLLAMNKLRNNFLNFDAPVEGALTSSLKKLFNETNPESGLRNNINPRSFFGCVCSKYPQFRGYQQHDSHEYLRCLLDGLSTEELAARKQNGSPKKDGTTPNNTLVDALFGGQISSTVCCIDCGHFSTVYEPFLDLSLPVPTKKPPPRKAQHVSRTKKSKLPPKKGGKTRYKGNKDASPLPVQSLLKQSPSHVSSCPAQSNISSVAGEMLGSSADSSVLGSGEVSSMADKQNSSSPNSVAVEESQHTLQVLDNATEETLASADDFTWLDFVEAGTVVDEGDSISQKEDTPEVHETKNNNECLKELHVQAASCESSGSFCFLKDEEDQNLRPDSSSANRWEDEVPLQVQGSEVLLLPYKEESSSAAEITGDDREASSSVLGCAQEEIEFDGLGDLFDEPETVFAGPAPRPSSSGGVKEAGFIVGNNNSESDPDEVDDADTPVSVESCLAHFIKPELLSDDNAWHCENCSKTHRQKMETYTQAKNASDGNETRCHNEPGYAACSVKVGGIGNGDMGNEKNVESSVSHVKLDTKLESGQIDELNTNTNDRDHGTLGMKDNEELQSSGSHKACNEESCDRPPADSCTTLHMIGTVQKGDTQMLGQDNNDSDECSEEEASSESVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVSFRERMDLRPYMNPGCISEENYEYNLVGVVEHSGSMRGGHYVAYVRGGQRNRGKADKEVEGSTWYHASDAYVREVSFNEVLRCEAYILFYEKN* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0004 980 CDD Peptidase_C19K 852 978 - -
Lan15g0004 980 SUPERFAMILY Cysteine proteinases 212 979 IPR038765 -
Lan15g0004 980 Gene3D Cysteine proteinases 197 418 - -
Lan15g0004 980 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 77 979 - -
Lan15g0004 980 MobiDBLite consensus disorder prediction 366 426 - -
Lan15g0004 980 MobiDBLite consensus disorder prediction 408 426 - -
Lan15g0004 980 MobiDBLite consensus disorder prediction 439 471 - -
Lan15g0004 980 ProSiteProfiles Zinc finger UBP-type profile. 33 163 IPR001607 GO:0008270
Lan15g0004 980 Pfam Ubiquitin carboxyl-terminal hydrolase 213 977 IPR001394 GO:0004843|GO:0016579
Lan15g0004 980 Gene3D Cysteine proteinases 777 980 - -
Lan15g0004 980 SUPERFAMILY RING/U-box 34 151 - -
Lan15g0004 980 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 212 980 IPR028889 -
Lan15g0004 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 161 IPR013083 -
Lan15g0004 980 MobiDBLite consensus disorder prediction 767 803 - -
Lan15g0004 980 MobiDBLite consensus disorder prediction 375 395 - -
Lan15g0004 980 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 213 228 IPR018200 GO:0004843|GO:0006511
Lan15g0004 980 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 911 928 IPR018200 GO:0004843|GO:0006511
Lan15g0004 980 MobiDBLite consensus disorder prediction 821 847 - -
Lan15g0004 980 Pfam Zn-finger in ubiquitin-hydrolases and other protein 59 145 IPR001607 GO:0008270
Lan15g0004 980 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 77 979 - -
Lan15g0004 980 Gene3D Cysteine proteinases 633 711 - -
Lan15g0004 980 SMART Zf_UBP_1 81 134 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0004 Lan-Chr15 32719 37094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0004 852 979 Miscellaneous Gene Families AT2G24640 37.405 3.20e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0004 K11844 - gmx:100780952 1247.65