Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g1010 ATGCCGTCGTGTTTATTGCCGGATACTTTCACTTTCCGATACGCTCTTCTTCCATCAGCAGCAGCAGCAGCTTCATCAATCAAAAGCAGAGATATTATTAGTTTCCAGCCCCAATGTGTTTTATCAACAACAACACCTTCAACCACTGCTCTTACTTTGGAAAAATTGGCACTTTCATCTTCTTCATCAACTCATTCTCATCCATCCCCATTTCTTCCTTCTCCCACACAGACAAACTTCAAAGGAACCTTATCTACAGAATCACTTCTTACTAGTGAAGAAAATGTAATAGCTGCTGCTGCTTCTGAAGCTGTTGCTCTTGCTAAAGCAGCTTTGAAAGTTGCAAAGGTTGCTGCCCTACTAGTTAAAAACAAGTCCCCACCGGAAGCAGCGTATACACCATCAAATGATTCTTCCAAATCTGATAATTTACTTCTTCTCAAATGGGTACAACATTTGGAAGCACAAGAAGATGGTGTAGTATCTGCTGGAGCAGAAATAATGGAACATGTTTACAATGACATAAAAGAGGAGTCTGATGATGCAGAGCCCACCTATGAGGAACTTGAGCGTCTGCATCAACAGCTCTCTGATAGTATAGCTGTAAGATCTACACGCCAAACAGAAAGAAAAGCTAAAAGAGTCAGAGCGGCAGAGAAGTCTGCCACACCTATGGTTTCCTTTAAGTCCGGCTCCACCAGCAGGAAAAAGCGTGTTCCTACACAAGAAGTAGACTATTCTGATCCACTTCGTTACCTAAGAGCAACAACTAGCACTTCTAGGCTTCTCACTCCATCAGAAGAAATTGAGTTGTCTGAAGGAATACAGGACCTACTAAAGCTTGAAAAACTCCAGGAGGATCTCACAGAAAGATGTGGTAGCCAGCCCACATTTGCGCAATGGGCTGCAGTGGCAGGGGTAGATCAGAAGACCCTAAGGAAGCGTTTAAATTATGGCATGTTTTGCAAAGACAAAATGATTAAAAGCAATATACGGCTTGTCATATCAATTGCAAAGGGTTATCAGGGTGCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGTCGAGGCCTGGTAAGAGGTGCAGAAAAGTTTGATGCTTCCAAGGGTTTCAAGTTCTCCACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGCAAATCACTTTCTGATCAGTCAAGGACTATCCGCTTGCCGTTCCACATGGTGGAGGCAACTTACAGAGTGAAAGAGGCTAGAAAACAATTGTATAGTGAAAATGGAAGGCAGCCTGATGACGAAGAAGTTGCTGAGGCAACTGGACTGTCAATGAAGAGGCTTAGTGCTGTACTTTTAACCCCGAAAGCTCCTAGATCTCTGGAACAGAAGATTGGGATCGACCAGAATCTTAAACCTTCAGAAGTAATCGCTGATCCTGAAGCGGAAACAGCGGAAGAACAGCTGATCAAGCAATTCATGAAGAAGGATCTTGAGAAGGTACTGGACAGTCTGAATCCAAGAGAGAAGCAGGTGATAAGATGGAGATTTGGAATGGATGATGGAAGGATGAAGACCCTGCAAGAGATAGGGGAAAGCATGGGTGTGAGTAGGGAGAGAGTTAGGCAAATTGAGTCATGTGCTTTTAGGAAACTCAAGAACAAGAAGAGAACCAAGCATTTGCAGCAGTATCTCATTTCATAA 1683 0.4337 MPSCLLPDTFTFRYALLPSAAAAASSIKSRDIISFQPQCVLSTTTPSTTALTLEKLALSSSSSTHSHPSPFLPSPTQTNFKGTLSTESLLTSEENVIAAAASEAVALAKAALKVAKVAALLVKNKSPPEAAYTPSNDSSKSDNLLLLKWVQHLEAQEDGVVSAGAEIMEHVYNDIKEESDDAEPTYEELERLHQQLSDSIAVRSTRQTERKAKRVRAAEKSATPMVSFKSGSTSRKKRVPTQEVDYSDPLRYLRATTSTSRLLTPSEEIELSEGIQDLLKLEKLQEDLTERCGSQPTFAQWAAVAGVDQKTLRKRLNYGMFCKDKMIKSNIRLVISIAKGYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGIDQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRWRFGMDDGRMKTLQEIGESMGVSRERVRQIESCAFRKLKNKKRTKHLQQYLIS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g1010 560 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 458 557 IPR013324 -
Lan14g1010 560 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 324 548 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 26 559 - -
Lan14g1010 560 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 247 396 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 PRINTS Major sigma-70 factor signature 350 363 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 PRINTS Major sigma-70 factor signature 374 382 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 PRINTS Major sigma-70 factor signature 498 510 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 PRINTS Major sigma-70 factor signature 519 534 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 PRINTS Major sigma-70 factor signature 534 545 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 CDD Sigma70_r4 488 546 - -
Lan14g1010 560 ProSitePatterns Sigma-70 factors family signature 2. 519 545 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 399 472 IPR013324 -
Lan14g1010 560 Pfam Sigma-70 region 2 326 395 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 Pfam Sigma-70, region 4 494 546 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 26 559 - -
Lan14g1010 560 Gene3D RNA Polymerase Primary Sigma Factor 86 398 - -
Lan14g1010 560 Pfam Sigma-70 factor, region 1.2 248 280 IPR009042 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987
Lan14g1010 560 Gene3D - 399 476 IPR036388 -
Lan14g1010 560 MobiDBLite consensus disorder prediction 204 218 - -
Lan14g1010 560 MobiDBLite consensus disorder prediction 203 241 - -
Lan14g1010 560 Pfam Sigma-70 region 3 405 481 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lan14g1010 560 Gene3D - 480 560 IPR036388 -
Lan14g1010 560 PIRSF Sigma_factor_SigC 13 560 IPR016262 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g1010 Lan-Chr14 16219377 16223103 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g1010 - - aprc:113864822 734.176