Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0930 ATGATTTCTCAGTTTTTCGTGCTTTCACAAAGAGGCGACAACATCGTTTTCCGCGATTATCGTGGTGAAGTACAAAAAGGAAGTGCTGAAACATTTTTCCGAAAAGTGAAGTTCTGGAAAGAACACTCTGAAGATGAAGAAGGAGATGCTCCACCTGTTTTTAATGTAGATGGTGTGAACTACTTTCATGTCAAGGTAGCTGGTTTGCATTTTGTTGCTACAACTAGACTCAATGTTTCACCTTCTCTTGTTCTCCAACTTTTACAAAGAATTGCACGCCTTATCAAAGATTACCTTGGTGTTCTTAATGAAGATTCTTTCCGAAAGAACTTCGTGCTCGTCTATGAATTGCTTGATGAAGTCATTGATTTTGGTTATGTGCAAACAACCTCTACTGAGGTTCTGAAGTCGTATGTTTTCAATGAGCCAATTGCGGTTGATACTGCACAAATACCTGCCCTTGGTCCTGCTTCCATTTTTATGCAAGGGAACAAAAGAATGCCAGCTACAGCTATTACAAAATCTGTTCTTGCTAACGAACCTGGTGGTAGGAAGAGGGAGGAGATTTTTGTTGATGTAATTGAAAAAATAAGTGTCACATTCAACTCTAGTGGATTAATACTTACTAGTGAGATAGATGGCACCATTCAAATGAAAAGTTATCTTACCGGTAATCCAGAGATCCGAGTTGCTCTCAATGAGGACCTGGGTATAGGAGCAAGTGATTATCGAGGTTCAGGCGCTGTGATTTTAGATGATTGTAACTTTCATGAGTCCGTACACCTTGATAGTTTTGATGTTGACCGAACTTTGTCATTGGTACCACCAGATGGTGAATTTCCCGTGATGAATTATCGTATGACTCAACAATTTAAGCCACCCTTTCGTATTAACGCATTGATTGAAGAAGCAGGACCCCTCAAGGCCGAAGTGACCATTAAAGTGCGAGCTGACTTCAACTCAAGCATCAATGCTAACACTGTTCTTATACAAATGCCACTGCCAACATATACTGCTCGTGTTAATTTTGAGTTGGAACCTGGAGCAGTTGGAAACACGACTGATTTTAAGGAAGCAAATAAAAGACTGGAATGGGGCCTAAAAAAGATTGTTGGTGGATCTGAACATACATTGCGAGCAAAGCTAACATTTGCACAGGAGTTACATGGAAATATCATGAAGGAAGCAGGTCCTCTTAGCATGACCTTCACTATACCTATGTATAATGCTTCAAGGCTTCAGGTGAAGTACTTGCAAATAGCAAAAAAGTCCAAAGCAGATAATCCATATAGATGGGTTAGATATGTAACCCAAGCAAACTCATATGTGGCACGATTGTAA 1341 0.399 MISQFFVLSQRGDNIVFRDYRGEVQKGSAETFFRKVKFWKEHSEDEEGDAPPVFNVDGVNYFHVKVAGLHFVATTRLNVSPSLVLQLLQRIARLIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIAVDTAQIPALGPASIFMQGNKRMPATAITKSVLANEPGGRKREEIFVDVIEKISVTFNSSGLILTSEIDGTIQMKSYLTGNPEIRVALNEDLGIGASDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPDGEFPVMNYRMTQQFKPPFRINALIEEAGPLKAEVTIKVRADFNSSINANTVLIQMPLPTYTARVNFELEPGAVGNTTDFKEANKRLEWGLKKIVGGSEHTLRAKLTFAQELHGNIMKEAGPLSMTFTIPMYNASRLQVKYLQIAKKSKADNPYRWVRYVTQANSYVARL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0930 446 Pfam Clathrin adaptor complex small chain 1 135 IPR022775 -
Lan14g0930 446 Gene3D Mu homology domain, subdomain B 185 441 - -
Lan14g0930 446 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 2 446 - -
Lan14g0930 446 SUPERFAMILY SNARE-like 1 143 IPR011012 -
Lan14g0930 446 Gene3D - 1 145 - -
Lan14g0930 446 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 185 445 IPR036168 -
Lan14g0930 446 CDD AP4_Mu_N 3 146 - -
Lan14g0930 446 CDD AP-4_Mu4_Cterm 181 446 - -
Lan14g0930 446 Pfam Adaptor complexes medium subunit family 185 445 IPR028565 -
Lan14g0930 446 PANTHER AP COMPLEX SUBUNIT MU 2 446 - -
Lan14g0930 446 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan14g0930 446 PRINTS Clathrin coat assembly protein signature 104 131 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan14g0930 446 PRINTS Clathrin coat assembly protein signature 251 278 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan14g0930 446 PRINTS Clathrin coat assembly protein signature 364 375 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan14g0930 446 Gene3D Mu homology domain, subdomain B 293 445 - -
Lan14g0930 446 PIRSF AP_complex_mu 1 446 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan14g0930 446 ProSiteProfiles Mu homology domain (MHD) profile. 186 445 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0930 Lan-Chr14 15755205 15759405 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0930 K12402 - gmx:100800985 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0930 14 15755205 15759405 Lan14g0930 14 15755205 15759405 ECH