Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0879 ATGCAAACGTGGAAGCAGATCAGAGACAGGGAAGATGGGAAATTATCGTCACGCACTTTCGCTAATCGCATAAAATCAAATCGTATCTCTGATCTTCAATTATCGAATCACAAAGATATTGTTTCTTCTCATAAAGGTTCAATTAATTCACTTCAAATTGATTTTAGTGAACGAAGATATTTATTATCTGCTGCATCCGATTCTACAGTTGCTGTTTATGATATTCAACGTGCAACCAATTATGAAGGAGGTGGTGTGATTTCTAAGCATAGTTCTATATTTGTTGTTGATAAACAACATGAATCGGGTCATAAATATGCAGTGTCTTCAGCTATATGGTATCCTATTGATACTGGTTTATTCATTACTGGTTCATATGATCATCATATTAATGTTTGGGATACTAATACCACCAAGGTTGTAGTGAATTTCAAAATGCCTGGGAAGGTGTATAAGACTGCAATGTCTACATTGGCAACATCACACATGCTTATTGCTGCTGGAACTGAGGATGTTCAAGTTCGACTTTGTGATATTGCTTCGGGTGCATTTGCTCACACTTTGTCCGGTCACCGTGCAGATGGAGTAATGAATGTTGAATGGTCTACTTCAAGTGAGTGGGTCTTGATTACTGGGGGATGTGATGGAGCAATACGTTTTTGGGACATCAGACGAGCTGGCTGCTTCCTTTTATTAGATCAATCCCGGACCCAGCTTGGAAGACGCCCAACTATACTTAAACATTCTGCGATAACTAAGGATTCAAGTACCAAATTGCGTACTGCACAAAAGAAACATGCTAATGGGGGTGGTTGCAAACAACTACCAATTGGTAGAGTTCCATCCAAGGGACCAATGAAGCAGAGATTACATCCAGGATTGCTGTCTACTCAGGACCGCGCAACTGCTCATTATGGTGCCGTGACAGGGTTAAAAGTAACAGAGGATGGCATGTATCTCCTTAGTACAGGGTCTGATTCAAGGTTGAGATTGTGGGATGTTGAATCTAGCTGTGACACACTTGTGAACTTCGAAACAGTCCGCCTGCAAACAAGCAAACCTATTCAATTAGCGACCGCTCAAGATTCAGGCCTTGTTTTTGTTCCATGCATGAGAACTGTGAAAGCATTTGACATGTGGTCTGGGAACACATACACAACATTACGTGGCCACTATGAATGTGTGAACGCTTGCTGGTTTAATCAACAAGATCAGGAATTATATACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCTAGATCAATTGCTGATCAAATGGACGAAGGAGCCGATGAGGATCAAGATAACTGGAGTAGCTGA 1329 0.4101 MQTWKQIRDREDGKLSSRTFANRIKSNRISDLQLSNHKDIVSSHKGSINSLQIDFSERRYLLSAASDSTVAVYDIQRATNYEGGGVISKHSSIFVVDKQHESGHKYAVSSAIWYPIDTGLFITGSYDHHINVWDTNTTKVVVNFKMPGKVYKTAMSTLATSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRADGVMNVEWSTSSEWVLITGGCDGAIRFWDIRRAGCFLLLDQSRTQLGRRPTILKHSAITKDSSTKLRTAQKKHANGGGCKQLPIGRVPSKGPMKQRLHPGLLSTQDRATAHYGAVTGLKVTEDGMYLLSTGSDSRLRLWDVESSCDTLVNFETVRLQTSKPIQLATAQDSGLVFVPCMRTVKAFDMWSGNTYTTLRGHYECVNACWFNQQDQELYTGGNDRQILVWSPARSIADQMDEGADEDQDNWSS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0879 442 MobiDBLite consensus disorder prediction 265 291 - -
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 83 IPR001680 GO:0005515
Lan14g0879 442 SUPERFAMILY WD40 repeat-like 41 422 IPR036322 GO:0005515
Lan14g0879 442 Pfam WD domain, G-beta repeat 302 333 IPR001680 GO:0005515
Lan14g0879 442 Pfam WD domain, G-beta repeat 384 420 IPR001680 GO:0005515
Lan14g0879 442 Pfam WD domain, G-beta repeat 102 134 IPR001680 GO:0005515
Lan14g0879 442 Pfam WD domain, G-beta repeat 186 222 IPR001680 GO:0005515
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 336 - -
Lan14g0879 442 Gene3D - 4 423 IPR015943 GO:0005515
Lan14g0879 442 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 442 IPR042238 GO:0006283
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 388 420 - -
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 137 - -
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 224 IPR001680 GO:0005515
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 336 IPR001680 GO:0005515
Lan14g0879 442 SMART WD40_4 89 134 IPR001680 GO:0005515
Lan14g0879 442 SMART WD40_4 181 222 IPR001680 GO:0005515
Lan14g0879 442 SMART WD40_4 291 333 IPR001680 GO:0005515
Lan14g0879 442 SMART WD40_4 34 74 IPR001680 GO:0005515
Lan14g0879 442 SMART WD40_4 381 420 IPR001680 GO:0005515
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Lan14g0879 442 ProSitePatterns Trp-Asp (WD) repeats signature. 320 334 IPR019775 -
Lan14g0879 442 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Lan14g0879 442 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Lan14g0879 442 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Lan14g0879 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 388 420 IPR001680 GO:0005515
Lan14g0879 442 ProSitePatterns Trp-Asp (WD) repeats signature. 209 223 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0879 120 229 Miscellaneous Gene Families AT5G08390 28.182 1.08e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0879 K10570 - gmx:100790433 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0879 14 15428063 15431900 Lan14g0879 14 15428063 15431900 ECH