Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0579 ATGTACCCATTGTTGAAGCAAACACATGGTCCTCACTCTTCACTTTCTTATTGCTCTCACCTCATACACCAATGTTCTTCCCAAAAATCTCTCACCTTTCTCAAAATCGTCCATGCCCATTTCCTCAAACTGGGTTTCAACACCTATACTTATCTGGGTAATCGCTGTCTCAATCTTTACTCGGAGTTATGTCATGTTAACGATGATGCCTTCAAGGTGTTTGATGATATTACTCACAAGAATTCCACTTCCTGGAACATTTACTTAAAAGGGTTGCTCAAAAGTGGCAATCTTGGAAAGGCGTGCCACTTGTTTGATACAATGCCTGTTAGAGACGTGGTTAGTTGGAACTCCATGATTTCAGGTTATACTCATTTTGGGTTTTATAATCATGCCTTGGAGCTGTTTGTTGAAATGCAAAATGCTGGTGTGAGGCCAAGTGGGTTCACCTTTTCAATTCTCGCGTCACTTGTGTTGAGTCCTTGTCATGCTAAACAGATCCATTGTAGGGTGATTCGGAGTAGTTTCAATTTGTCTAATGTAGTGCTTGGGAATTCGTTGATAGCGATGTATGGGAAACTTGGTATTGTTGAATATTGTTTTGGTTTGATTTTGACTATGAAGGAGTGTGATGTTATATCTTGGAACTCTTTAATTTGGGCTTGTCATAGAGTAGGATATGATCAACTAGCTCTAGAGCAGCTCCATCAGATGAGAGCTATAGAGTTGTTGCCTGACCAGTTTACGTGTTCAATATTGATGAGTGTGTGTTCTAACTTGCGAGATTTGGAAAAGGGTAAGCAAATATTTGCCTTTTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTATCCAGTGCTGCTATTGATTTTTTTTCCAAATGCAACAGATTGGAGGATTCAGTCTTGATTTTTAAAGAACAGGATCATTGGGATTCAGCTTTATGCAATTCCATAATTTCAAGTTATGCTAGACATGATTTAGGGGAAGATGCTATGCATGTTTTTGTGCTGACCTTGAGGAAGAATATCAGGCCAACTGAATACATGTTTAGCAGTCTTCTGAGTTCTGTTTCCATTTTCTTACCATTAAAAATGGGAAACCAAATCCATTCTTTGGTTCATAAATTAGGTTTCGAGTCAGATGCAATTGTTGCCAGTTCACTTGTTGATATGTATGCAAAATTTGGATATATTGATGATGCCTTGAATATCTTCAATGAAATGAAAATAAAAGATTTGGTATCATGGAACACCATTATGATGGGACTGACCTACAATGGCAAAGTTTCAATGGCCATTCACCTTTTTGAGGAATTAATAAGAGAAGGTACACCACTGGATCGAATAACACTCGCCGCAGTTCTACTGGCTTGCAACTATGGGAATTTTTATGATGAAGGAGTTCAAATATTTTCCTCAATGGAGAAGGACTTTGGAGTTAAACCAGGGGAAAAACATTATGCATATATTATGGACTTGTTGAGTCGAGCTGGTAAACTCAAAGAGGCCATTGACATTTTAGAAACAATGCCGTATAGAACAAACTCTAACATTTGGAGGTCAGTTCTTTCTGCATGTGTAATTCATGAGGACTTGCGAGTTATTGAAACTGTTGCAAAGAAAATAATGGAGAAGGAACCACAGACACCCTTACCTTACTTAATGTTGGCTCAGGCATATGAGATGAGAGGTAGATGGGAGAGCATGGTTCGAGTGAGGAAGGCTGTGGGACATAGAGGTCCGAATGAGCTCACTGGGTGCAGTTGGGTTGGGATAGACAACCATGTATACTCTTTTGCATCAAACCTACTAGAGCATTATGGTGGCAAGGATCTTTATCTGGTGTTGAATTTACTAATGTGGGAGATGGAGAGTGAAGATTGTCATGTCTAA 1896 0.3898 MYPLLKQTHGPHSSLSYCSHLIHQCSSQKSLTFLKIVHAHFLKLGFNTYTYLGNRCLNLYSELCHVNDDAFKVFDDITHKNSTSWNIYLKGLLKSGNLGKACHLFDTMPVRDVVSWNSMISGYTHFGFYNHALELFVEMQNAGVRPSGFTFSILASLVLSPCHAKQIHCRVIRSSFNLSNVVLGNSLIAMYGKLGIVEYCFGLILTMKECDVISWNSLIWACHRVGYDQLALEQLHQMRAIELLPDQFTCSILMSVCSNLRDLEKGKQIFAFCFKVGFVYNSIVSSAAIDFFSKCNRLEDSVLIFKEQDHWDSALCNSIISSYARHDLGEDAMHVFVLTLRKNIRPTEYMFSSLLSSVSIFLPLKMGNQIHSLVHKLGFESDAIVASSLVDMYAKFGYIDDALNIFNEMKIKDLVSWNTIMMGLTYNGKVSMAIHLFEELIREGTPLDRITLAAVLLACNYGNFYDEGVQIFSSMEKDFGVKPGEKHYAYIMDLLSRAGKLKEAIDILETMPYRTNSNIWRSVLSACVIHEDLRVIETVAKKIMEKEPQTPLPYLMLAQAYEMRGRWESMVRVRKAVGHRGPNELTGCSWVGIDNHVYSFASNLLEHYGGKDLYLVLNLLMWEMESEDCHV* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0579 631 Pfam Pentatricopeptide repeat domain 209 258 IPR002885 -
Lan14g0579 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Lan14g0579 631 PANTHER OS03G0435200 PROTEIN 1 629 - -
Lan14g0579 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 412 IPR002885 -
Lan14g0579 631 Gene3D Tetratricopeptide repeat domain 462 606 IPR011990 GO:0005515
Lan14g0579 631 Gene3D Tetratricopeptide repeat domain 221 362 IPR011990 GO:0005515
Lan14g0579 631 Gene3D Tetratricopeptide repeat domain 365 461 IPR011990 GO:0005515
Lan14g0579 631 Gene3D Tetratricopeptide repeat domain 24 166 IPR011990 GO:0005515
Lan14g0579 631 TIGRFAM PPR: pentatricopeptide repeat domain 114 147 IPR002885 -
Lan14g0579 631 TIGRFAM PPR: pentatricopeptide repeat domain 84 113 IPR002885 -
Lan14g0579 631 TIGRFAM PPR: pentatricopeptide repeat domain 316 347 IPR002885 -
Lan14g0579 631 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Lan14g0579 631 Pfam PPR repeat 491 511 IPR002885 -
Lan14g0579 631 Pfam PPR repeat 387 412 IPR002885 -
Lan14g0579 631 Pfam PPR repeat 316 338 IPR002885 -
Lan14g0579 631 Pfam PPR repeat 415 444 IPR002885 -
Lan14g0579 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lan14g0579 631 Pfam PPR repeat family 111 154 IPR002885 -
Lan14g0579 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Lan14g0579 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Lan14g0579 631 PANTHER OS07G0578800 PROTEIN-RELATED 1 629 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0579 Lan-Chr14 12145264 12148009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0579 86 625 Glycoside Hydrolase AT3G49170 30.341 5.32e-81 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0579 - - gmx:102663822 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0579 14 12145264 12148009 Lan14g0579 14 12145264 12148009 ECH