Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0135 ATGGAGATTTCTCCACAAACAACAAATCAAAGTGAAAATGTAGTAACGAAGAAGAAAGAGACAAGAGGAAGAAAACCAAAACCCAAAGATGATCAACAACAACAAACAAAAAAGAAACAACAACAACAACACCAAGAACATGAACCTACGGTGGATGAAAAATACACACAATGGAAGTCTCTTGTTCCTGTTCTTTATGATTGGCTCGCTAATCATAACCTTGTTTGGCCTTCTCTCTCTTGCAGGTGGGGTCCTCAACTTGAACAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACTGATGGCAGTGTTCCAAATACTTTGGTCATTGCAAATTGCGAGGTTGTTAAGCCTAGGGTTGCAGCTGCAGAGCACATTTGTCAGTTTAATGAAGAGGCACGGTCCCCGTTTGTTAAGAAGTACAAGACCATCATACATCCCGGAGAGGTGAACAGAATTAGGGAACTGCCACAAAATTCTAAGATAGTGGCTACTCATACCGACAGCCCTGATGTTCTGATTTGGGATGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTGCAAACTCTCGTCCAGATTTGATACTAACTGGACACCAAGATAATGCAGAATTCGCTCTTGCAATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAATCGGTGGTGTTGTGGAGCATTGCGGACCATATAACTTCTGCTGCAGACCCCACATCTGGTGGCTCAATTATCAAGCAGGATTCCAAATCTGGGGAAGGCAATGATAAATCTGCCGATTCCCCATCTCTTGGACCTAGAGGTGTCTACTACGGACACGACGATACTGTTGAAGATGTGGCTTTCTGCCCTTCTAGTGCACAAGAGTTCTGTAGCGTTGGAGATGATTCTTGTCTCATATTATGGGATGCTCGTGCTGGTTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCATAACGCTGATCTTCATTGTGTCGATTGGAATCCACATGATGTTAATCTGATTCTTACTGGGTCGGCTGATAATTCTGTTTGCATGTTTGATCGCCGCAAACTCACCTCTGATGGAATTGGATCTCCTATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCCGAAGATGGTCTCTTAAACCTGTGGGACTATGAGAAGATTGGTAAGAAGATAGAGCGATCTGGAAAACGTGCTCCTCCAGGATTGTTTTTCCAACATGCAGGTCATAGAGACAAAGTGGTTGACTTCCATTGGAATGCATCTGATCCATGGACGATTGTTAGCGTCTCTGATGACTGTCAAAGTACTAGTGGAGGGGGAACATTGCAGATTTGGCGCATCAGTGATTTGATCTACAGACCCGAAGAGGAGGTTCTGGCAGAGCTGGAGAAATTCAAATCTCATGTCGTGGCGTGTGCTTCGAAGTCCGAAAAATGA 1503 0.4424 MEISPQTTNQSENVVTKKKETRGRKPKPKDDQQQQTKKKQQQQHQEHEPTVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHICQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIADHITSAADPTSGGSIIKQDSKSGEGNDKSADSPSLGPRGVYYGHDDTVEDVAFCPSSAQEFCSVGDDSCLILWDARAGSSPVVKVEKAHNADLHCVDWNPHDVNLILTGSADNSVCMFDRRKLTSDGIGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNLWDYEKIGKKIERSGKRAPPGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCQSTSGGGTLQIWRISDLIYRPEEEVLAELEKFKSHVVACASKSEK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0135 500 MobiDBLite consensus disorder prediction 1 52 - -
Lan14g0135 500 SUPERFAMILY WD40 repeat-like 140 494 IPR036322 GO:0005515
Lan14g0135 500 SMART WD40_4 271 311 IPR001680 GO:0005515
Lan14g0135 500 SMART WD40_4 141 180 IPR001680 GO:0005515
Lan14g0135 500 SMART WD40_4 365 405 IPR001680 GO:0005515
Lan14g0135 500 SMART WD40_4 195 235 IPR001680 GO:0005515
Lan14g0135 500 SMART WD40_4 421 468 IPR001680 GO:0005515
Lan14g0135 500 SMART WD40_4 316 356 IPR001680 GO:0005515
Lan14g0135 500 Pfam WD domain, G-beta repeat 200 235 IPR001680 GO:0005515
Lan14g0135 500 Pfam WD domain, G-beta repeat 276 311 IPR001680 GO:0005515
Lan14g0135 500 Pfam WD domain, G-beta repeat 324 356 IPR001680 GO:0005515
Lan14g0135 500 Pfam WD domain, G-beta repeat 366 405 IPR001680 GO:0005515
Lan14g0135 500 MobiDBLite consensus disorder prediction 244 276 - -
Lan14g0135 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 407 - -
Lan14g0135 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 407 IPR001680 GO:0005515
Lan14g0135 500 PANTHER WD40 REPEAT FAMILY 29 497 - -
Lan14g0135 500 Gene3D - 28 486 IPR015943 GO:0005515
Lan14g0135 500 MobiDBLite consensus disorder prediction 15 52 - -
Lan14g0135 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 320 IPR001680 GO:0005515
Lan14g0135 500 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 53 119 IPR022052 -
Lan14g0135 500 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 29 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0135 Lan-Chr14 1684630 1690904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0135 278 439 Miscellaneous Gene Families AT5G08390 25.455 3.88e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0135 K10752 - gmx:100779302 885.945