Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0502 ATGGCGACTCTTGATTCCGACGTTCCTATGGTTCCCGCCGGCGAACCTTCTAGCATTGCTGGTCCTTCTTCCAAAAAGCCTAAGCGCTTTGAGATTAAGAAGTGGAACGCCGTTGCTCTCTGGGCTTGGGACATCGTTGTGGATAACTGCGCTATCTGCCGTAACCATATAATGGATCTATGCATTGAGTGCCAAGCCAACCAAGCTAGCGCCACTAGCGAGGAATGCACTGTTGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATTAGTAGATGGCTGAAGACCCGTCAAGTTTGCCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAG 351 0.49 MATLDSDVPMVPAGEPSSIAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0502 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Lan13g0502 116 PANTHER RING BOX 1 116 - -
Lan13g0502 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Lan13g0502 116 SUPERFAMILY RING/U-box 28 113 - -
Lan13g0502 116 MobiDBLite consensus disorder prediction 1 26 - -
Lan13g0502 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Lan13g0502 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 116 - -
Lan13g0502 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 116 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0502 Lan-Chr13 3724168 3726062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0502 K03868 - gmx:100789570 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0429 7 3044154 3046350 Lan13g0502 13 3724168 3726062 LSH
Lan8g1534 8 22411487 22413361 Lan13g0502 13 3724168 3726062 LSH