Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0445 ATGGGTGTTCCATCATTTAATATATGGTTAGTAAACAAGTATCCAAATGTGGTAGTAAGAGCCAAAGAAGATGTTAACACTGATACTCACATGCCAAACCCAAACGGCATTGAGTTTGATAACTTGTACTTAGACGTGAATGGGATCATTCATCCATGTTTCCATCCTGAGGGTGACAATAGTTCACCACCCACAACAATTGAAGAGGTGAAGAAGAACATTTTCAAATATATTGATCGACTTGTTAATATCGTTAGGCCTCGCAAGCTCTTATACATGGCTATTGATGGAGTAGCACCACGGGCCAAAATGAATCAACAGAGATCCGAAATTGAGGAAGATAGGCTCAGAAAGCAATTTGAAAGGAAAGGCAAACAAGTTCTTCCAAAGCAAGAATCTGAGTTATTAGATTCAAATATTATCACACCAGGCACAGAGTTCATGCATGAACTCTCAATGGCACTTCAAAGCTACATCTCTTCAAGGATAGCCTCTAATTCATGGAAGGATATTATGGTAATTCTCTCTGATGCAAATGTTCCTGGAGAAGGGGAACATAAGATTATGTCCTACATATGTGCACAGCGTAATGTTCCTAATTATGATCCAAACACTAGACATTGCTTATATGGCTTGGATGCTGATCTTATAATGCTTGCACTGGCAACTCATGAGCCACACTTTTCAATACTCAGAGATGTGCTACCAGAAGAGCTGCAACCACAAGTGGGTGTTAAGCTTTTTCAGTTTATGCACGTATGGATATTGCGGGAATATCTTGAACTTGATATGAAGATAGAAGATCCTCCGGAGAACTTCAAATTTGATTTTGAGAAGATTATTGATGATCTTGTATTCATGTGCTTTTTTGCTGGAAATGATTTTTTGCCTAAGATGCCTACTTTGGAAATTAATGAGGGGGCTATTGATTTACTAATGACTGTTTACAAGAAAGAGTTCAAAAAACTTGGTGGATATCTTGTTGACATGAGCAAGATTGATGAGAAGAAGGCTGCTTTTGTTAAGTTATCAAGAGTTGAAAAGTTTATTCTAATGGTTGGGACATATGAAGAGCAAATTTTTAGGAAAAGATCCGAAATTCGGGAGCGAAAATTGAGAAGGCTCATTCGTGATCTTCAGGATGCTGAACAGGATAAGGAACATTGTTTCTCATATAATGATAATGAAAGTAGTTCGGATTGTGCTCTTGTCATTAAGAAGGATATGGCTTCTAATAACTCATCTCCTTCCTATGATGAGCTCCTTCAGAACACGAAGGATCTTAAAGAGTTACTGAAATCATGCATAATAGAACAAAATGACCTTTTTAAGACTGGAAAATTTCCACACGACAAGATAAAGTTAGGCACTACTGGATGGAGACAGAGATACTATAAAGAGAAGTTTTCGGTGGAAGGATCTATTGACATGGAGTCCAAAAGGAAAGATATATTACAGAAGTACACAGAGGGACTTTTATGGGTTCTACAATACTATTATTCAGGTGTCCCTTCTTGGACATGGTTTTATCCTGACAATTATGGTCCTTTTGCTTCCGACTTAAAGGGCATGGGCCAGGTGAGAGTAAATTTTAGTGTAGGGAAACCTTTCTTACCTTTTGATCAACTCTTAAGTGTCCTTCCTCCAAGCAGTGCTCATGCACTTCCAAGTGCCTATTCTCAATTAATGCTAAGTGAGGAATCAAACATATTGGACTTTTATCCTCTTGATTTTGAATTTGACACAGAAGGAAAGCGCTTTATGGGGCAGGGTATCTGCAAACTTCCATTCATAGACGAAACACGGCTTTTAGCTGAAACCAAAGAACTCCATAAGGGTTTATCTGAAAATGAAGCAAGTAGAAATTCGGTCAAGGTTGATACCTTGATTGTCAGAAGCAATAGCATCCTAGCTGAAAAAATTTGCTCCCTTTCTCGAGAGCCAAATCCATATTTCAAGTTAAATACTTGCAGAAGTAAGGACAATGGGTGGATCAGAAGTCTGTGCCACGAGTGTGTTGGAAAGCCTTGTGATCAGTTGAAGTTTTTTGACAACTTACAAGAAGATTACGTTCCATGTCTATGTTACAATCTTCCTCGTGGAAGTTCTCAAGTTCCTCGTTTATTATCCGGTGTAAAACTTCCAGAAAAGACAATTTCTGATGGTGACATAATGGAAACAATATTGTGGCATGAAAAAGGAACGTGGAATTTTAACCGGCACTGGGGTGCTCAAAAGTTTTCTCCAATTGCGAAAAATCCAGTTCGCAGATTTTCAGCAAATTCATCCTCTGAAGTACTTCACAAAGATGCTGGTATTGGATGGGGCTCTGGCAGAGGGAAGACATATAACAATACCAACATGAAAAGAACTGATATGGTTCAAAATGAGAGATTACATCAACATGAAGATTCTAGACCTTATCATGTTAATGCAATAAGAGATAGAAGATCTCAGCCTTATGTTGAGAACTTTAGGCAAGTAAGAATATCTGATGCTAGTCAATCGTTAAGGCCTAATGGTGGAACGCAATTTCCGACATCTGCAAGTGGTTTCACTAATCAGTCAGGCAATGTCTCTCATCAAGGTTCACATTCTGGGACCATGCCTTATGGTAGAGGTCAATATGGTTACAATACCTCAATGAGTACTCAAAGGAGTGGTTCCAAGGTTTTCCATGTTAAGGACCAAAATCGTTGGTAA 2703 0.3851 MGVPSFNIWLVNKYPNVVVRAKEDVNTDTHMPNPNGIEFDNLYLDVNGIIHPCFHPEGDNSSPPTTIEEVKKNIFKYIDRLVNIVRPRKLLYMAIDGVAPRAKMNQQRSEIEEDRLRKQFERKGKQVLPKQESELLDSNIITPGTEFMHELSMALQSYISSRIASNSWKDIMVILSDANVPGEGEHKIMSYICAQRNVPNYDPNTRHCLYGLDADLIMLALATHEPHFSILRDVLPEELQPQVGVKLFQFMHVWILREYLELDMKIEDPPENFKFDFEKIIDDLVFMCFFAGNDFLPKMPTLEINEGAIDLLMTVYKKEFKKLGGYLVDMSKIDEKKAAFVKLSRVEKFILMVGTYEEQIFRKRSEIRERKLRRLIRDLQDAEQDKEHCFSYNDNESSSDCALVIKKDMASNNSSPSYDELLQNTKDLKELLKSCIIEQNDLFKTGKFPHDKIKLGTTGWRQRYYKEKFSVEGSIDMESKRKDILQKYTEGLLWVLQYYYSGVPSWTWFYPDNYGPFASDLKGMGQVRVNFSVGKPFLPFDQLLSVLPPSSAHALPSAYSQLMLSEESNILDFYPLDFEFDTEGKRFMGQGICKLPFIDETRLLAETKELHKGLSENEASRNSVKVDTLIVRSNSILAEKICSLSREPNPYFKLNTCRSKDNGWIRSLCHECVGKPCDQLKFFDNLQEDYVPCLCYNLPRGSSQVPRLLSGVKLPEKTISDGDIMETILWHEKGTWNFNRHWGAQKFSPIAKNPVRRFSANSSSEVLHKDAGIGWGSGRGKTYNNTNMKRTDMVQNERLHQHEDSRPYHVNAIRDRRSQPYVENFRQVRISDASQSLRPNGGTQFPTSASGFTNQSGNVSHQGSHSGTMPYGRGQYGYNTSMSTQRSGSKVFHVKDQNRW* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0445 900 CDD PIN_XRN1-2-like 42 260 - -
Lan13g0445 900 Pfam Xrn1 helical domain 274 724 IPR041412 -
Lan13g0445 900 Coils Coil 362 385 - -
Lan13g0445 900 MobiDBLite consensus disorder prediction 835 874 - -
Lan13g0445 900 PANTHER 5'->3' EXORIBONUCLEASE 1 779 IPR027073 -
Lan13g0445 900 PIRSF Exonuclease_Xrn2 236 899 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lan13g0445 900 PIRSF Exonuclease_Xrn2 1 245 IPR017151 GO:0004534|GO:0005634|GO:0006139
Lan13g0445 900 Gene3D - 118 340 - -
Lan13g0445 900 Gene3D - 526 624 - -
Lan13g0445 900 PANTHER OS11G0157000 PROTEIN 1 779 - -
Lan13g0445 900 Pfam XRN 5'-3' exonuclease N-terminus 1 233 IPR004859 GO:0003676|GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0445 Lan-Chr13 3224519 3230040 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0445 - - gsj:114379404 1017.68