Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0377 ATGGGAAAGGACATCATCAGTTCTATGCCAAATGAAATCATTGCAATGATTTTAACTCTATTGACATTCAAAGAAGCTGTAAGGACTAGCATCTTATCTAGAAGGTGGAAGAATCTATGGACATTTTTCTTCGGTTTCTTAACCTTTGATAGTTCAATGAAGACTCTACACATGTATCGAGATAGGAAGACTATGAAGCTGAAAAAATGTATTCGATTTGTGAATAGGTGGGAGAAGTTCATGAGTAATTTGGAACATGTGCTAAGATCGATAACTAGCCCATCATTGCAAGGACTAAGAATTTGCATTGATATGGGTAATCCTCAAAAACTAGCTGACTTGATTAAGTTTGCTGCTGATAAGAGTGTCCGAGTGCTCGATCTAGACTTTTCGTATCATTTTATATCGCCATTTATTGGAGTAAGTGATAGAATTCGCAATGTCTTATCGCTGACACTTGTTCAAATGCAATCGCTGCGCAACTTGCGCGTCTTGCGCTTGGCTGCAGTGGATGTGGATGACGAAGTGGTACATTATTTTCTAGCAACTTGCCGATTTCTCGAGATATTGTTCATCAAAGAATCAAGAATCCTTGAACACTTAAGAGTTTGGGGTCATGGCCTGAGGTTGAAGCATTTGGAATTAGTAGAATGCAAAATTTCACATATTGAAATTTATGCTGAAAATCTTGTTACATTCAGATTCAACTGCTTTCAAAAAATTGAAACTTTCAACCTTGAATGGGTCCCTAGTCTCACAGAAGCTTCATTTGGAGGACAGTATAGCTGTTATCTGCAATCAAACATGCATGATATTGTTCTTCATCAATTACTCTCTCAGCTACTTGTTCTGAATTTGGAACTACGTGCCTTTGATTTGGTAATCAATAAAAACTTTCCTCTGGTGAAAAACATTCAGACATTTCTTCAAGGTCTACACAAGTTTACCAATGTGAAGCATTTAGAGCTTACAATTCCTCATGTGTGTGGAATGGAACTTGATCGTCCTATTTCTTTATTAACTGCATTTCCTTCCATATGTCTACTCAAATTGAAGTTCTATAGGTCCAGATTGGGGTCCCTACCAATGCAGCCATGGGTGGCTAATCTAGAATGTGAGTTTCCAAACCTGAGGGAGTTAGAAGTGTCAGGGTATAAAAGAGATCCTAGTCAAATTGAAATGTTGACAAGCATATTTGAGAATGCTCCTAATCTGAAAAAGATTGCAGTGGATCCACTCTCAGCAATTCATGTGCATAGATCAAATGATGTCAAGGCCTGGATTAGAGAAAGAAATCATGAATCTACTATGTGGTTTGTTGATGGTCTTAAACAAGATGTGCCTCCACATGTTGAATTGCTTGTTCTGTAG 1371 0.3778 MGKDIISSMPNEIIAMILTLLTFKEAVRTSILSRRWKNLWTFFFGFLTFDSSMKTLHMYRDRKTMKLKKCIRFVNRWEKFMSNLEHVLRSITSPSLQGLRICIDMGNPQKLADLIKFAADKSVRVLDLDFSYHFISPFIGVSDRIRNVLSLTLVQMQSLRNLRVLRLAAVDVDDEVVHYFLATCRFLEILFIKESRILEHLRVWGHGLRLKHLELVECKISHIEIYAENLVTFRFNCFQKIETFNLEWVPSLTEASFGGQYSCYLQSNMHDIVLHQLLSQLLVLNLELRAFDLVINKNFPLVKNIQTFLQGLHKFTNVKHLELTIPHVCGMELDRPISLLTAFPSICLLKLKFYRSRLGSLPMQPWVANLECEFPNLRELEVSGYKRDPSQIEMLTSIFENAPNLKKIAVDPLSAIHVHRSNDVKAWIRERNHESTMWFVDGLKQDVPPHVELLVL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0377 456 Pfam F-box domain 6 40 IPR001810 GO:0005515
Lan13g0377 456 SMART fbox_2 9 48 IPR001810 GO:0005515
Lan13g0377 456 ProSiteProfiles F-box domain profile. 3 39 IPR001810 GO:0005515
Lan13g0377 456 SUPERFAMILY F-box domain 1 51 IPR036047 GO:0005515
Lan13g0377 456 SUPERFAMILY RNI-like 120 411 - -
Lan13g0377 456 Gene3D - 1 41 - -
Lan13g0377 456 PANTHER F-BOX PROTEIN-LIKE 3 455 - -
Lan13g0377 456 PANTHER LIGASE, PUTATIVE-RELATED 3 455 - -
Lan13g0377 456 Gene3D Ribonuclease Inhibitor 131 427 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0377 Lan-Chr13 2542271 2544080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0377 1 192 EF-hand Containing Proteins AT5G41840 26.636 1.32e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0377 - - gmx:100778140 397.897