Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0352 ATGGCGCCGCCACAAGCCGTGTCAGGGAACACCCCTAGGAAAAAAATGACCAAACAATTGACAGGAAAGAGGGATGATACACCTTTACACTCCTCAGCCAGAGCAGGAAATTTGGATGTAATTAAGGATACACTTTCTGGTGCCGATGAGGGTGAAGTGCGTAAATTATTGGCAAAGCAGAATCAAGCTGGAGAAACAGCACTTTATGTTGCCGCTGAATACGGTCATGTTGATATGGTTAGGGAGTTGATTCAATATTATGATCTTGCTGATGCTGGAATTAAAGCAAGGAATGGTTTTGATGCACTCCATATTGCTGCTAAACAAGGACATTTCGATGTACTGAAGATCCTTATGAATGCTCATCCCGAGTTGTCAATGACCGTGGATCCATCAAACACCACGGCTTTGCACACGGCTGCAACACAAGGGCATATTGAGATAGTCAAATTTCTATTAGAAGCAGGAAGTAGCCTTGCAACCATTGCTAGAAGTAATGGGAAAACTGCTTTACATTCTGCTGCGAGAAATGGACATCTGGAGGTTGTGAAAGCAATTCTCGAGAAGGAGCCTGGGGTTGCGACGAGGACGGATAAGAAGGGTCAGACAGCGCTTCACATGGCAGTGAAGGGACAGAGTCTTGAGGTGGTGGAGGAGTTGATAAAAGCTGATCCCTCAACAATAAACATGGTTGATAATAAGGGTAACACCTCATTGCATATAGCAACCAGGAAGGGCAGATCTCAGATTGTTAAATTGCTTCTTGGACAGAAGGAAACAGATGCAAAGGTGGTTAATAGATCGGGTGAAACTGCATTAGACACTGCTGAAAAAAGTGGGAGCTCTGATGCTAAAGCAATTTTGTTGGAACACGGTGTTCAAAGTGCAAAAGCTATAAAACCTCAGCCAACAACGGCTACAGCCCGTGAATTGAAACAAACTGTCAGTGACATAAAGCATGAAGTCCATTACCAGTTGGAACACACTCGCCAAACTAGAAAACGTGTTCAAGGAATCGCCAAACGTCTCAACAAAATGCATGCTGAAGGACTTAACAATGCAATCAACTCCACTACTGTAGTTGCGGTCCTCATTGCCACTGTTGCATTTGCTGCTATTTTCACAGTTCCTGGCCAATTTGTTGATGACCCTAAAGATATCCCTCCGGGGATGACCCTTGGTGAAGCAAATATAGCTCCAAAAGCTCCATTTCTTATTTTCTTTGTATTTGATTCCATTGCCCTCTTCATTTCTCTGGCGGTCGTGGTGGTGCAAACTTCAGTTGTGGTTATAGAAAGCAAAGCAAAGAAGCAGATGATGGCTATTATTAACAAGCTGATGTGGTTGGCTTGTGTACTAATTTCAGTGGCCTTCTTGGCATTGTCGTTTATTGTGGTCGGGAAGGATGAGAAGTGGTTAGCTATTGCAGTAACCATTATAGGCACAACTATAATGGCTACAACATTAGGCATCATGTGTTATTGGGTCATTAGGCACCGCATTGAGGCCTCGAACCTGAGGAGCATTCGGAAATCTTCCATGGGAAGCAGGTCAAGGTCTTTTTCAGTGTCGGTGCCTATGTCAGATTCTGAGATACCAAACAATGAATTTAAGAAAATGTATGCAATTTAG 1632 0.435 MAPPQAVSGNTPRKKMTKQLTGKRDDTPLHSSARAGNLDVIKDTLSGADEGEVRKLLAKQNQAGETALYVAAEYGHVDMVRELIQYYDLADAGIKARNGFDALHIAAKQGHFDVLKILMNAHPELSMTVDPSNTTALHTAATQGHIEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVVKAILEKEPGVATRTDKKGQTALHMAVKGQSLEVVEELIKADPSTINMVDNKGNTSLHIATRKGRSQIVKLLLGQKETDAKVVNRSGETALDTAEKSGSSDAKAILLEHGVQSAKAIKPQPTTATARELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRLNKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKDIPPGMTLGEANIAPKAPFLIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWLACVLISVAFLALSFIVVGKDEKWLAIAVTIIGTTIMATTLGIMCYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVPMSDSEIPNNEFKKMYAI* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0352 543 Gene3D - 10 161 IPR036770 -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat profile. 200 222 IPR002110 GO:0005515
Lan13g0352 543 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 6 543 - -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat profile. 234 255 IPR002110 GO:0005515
Lan13g0352 543 ProSiteProfiles Ankyrin repeat profile. 132 164 IPR002110 GO:0005515
Lan13g0352 543 Pfam Ankyrin repeats (3 copies) 103 190 IPR002110 GO:0005515
Lan13g0352 543 Pfam Ankyrin repeats (3 copies) 198 260 IPR002110 GO:0005515
Lan13g0352 543 Pfam Ankyrin repeats (3 copies) 15 86 IPR002110 GO:0005515
Lan13g0352 543 PANTHER ANKYRIN REPEAT PLANT PROTEIN 6 543 - -
Lan13g0352 543 MobiDBLite consensus disorder prediction 1 33 - -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat profile. 98 130 IPR002110 GO:0005515
Lan13g0352 543 ProSiteProfiles Ankyrin repeat region circular profile. 132 159 - -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat region circular profile. 234 255 - -
Lan13g0352 543 Gene3D - 162 352 IPR036770 -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat region circular profile. 200 222 - -
Lan13g0352 543 Pfam Domain of unknown function 349 465 IPR026961 -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat region circular profile. 166 189 - -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat region circular profile. 98 120 - -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat region circular profile. 63 85 - -
Lan13g0352 543 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 234 264 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 132 161 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 200 230 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 166 195 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 268 298 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 63 92 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 98 127 IPR002110 GO:0005515
Lan13g0352 543 SMART ANK_2a 24 55 IPR002110 GO:0005515
Lan13g0352 543 ProSiteProfiles Ankyrin repeat profile. 63 85 IPR002110 GO:0005515
Lan13g0352 543 SUPERFAMILY Ankyrin repeat 28 293 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0352 Lan-Chr13 2306464 2309498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0352 7 543 Miscellaneous Gene Families AT1G07710 73.420 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0352 - - gmx:100808971 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0264 7 1693921 1697476 Lan13g0352 13 2306464 2309498 LSH