Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0349 ATGAACTTCCAAAGAGCTAAATCGATTAATCGAAAACCAGCACGAGCAATTCCATTCCTCCGTCATGGTAATAATAAACCTCCCCCTCGTAAACAACCTCAAATTCAACACCACAAAACTTCAAAGCTTCGCATTCGTATTCCTTTCATCACCGAAATCAAAGAGACCCAAAACCCAGAACAAGCCCTATCACTCTTTAACCATTACGAACAACAAGGTTTTACACACCATTACCCTTCCTATGCCGCTTTAATCTACAAGTTCGCTCGTTCTAGAAACTTCCAAGCCGTTGAAACCATTCTCAATCATATTCAACACACGGGCATGCATTGCAGAGAGACCATTTTCATTGCTCTGTTTCAGCATTATGGTAAATTGTTACTTCACGAAAATGCCGTTGAACTCTTTCACAGAATGCCTCACTTCAATTGTGTCCGTACACTGCAGTCTTTAAATACGCTTCTTAATGTTCTGGTTGATAATGATCGGTTTGATGAAGCCAGTGATTCTTTTAAGCGTTGTTATGAGATGGGTTTTCGTCCAAACACGGTTACTTTCAATATAATGATTAAGGGGTGGTTGGGGAAAGATCAGTGGGAAAAAGCTTGTGAGGTGTTTGATGAAATGCTTCAGAAGAAAGTGCAGCCGAGTGTTGTGACTTATAATAGTCTTATCGGGTTTTTATGTAGAAGGGGTGATTTGGACAAGGCAATGTCATTGCTCGAGGACATGAACAGGAAAAAGAAATATGCGAATGAAGTAACTTATACGTTGTTGATGGAAGGCTTGTGTTCTTTGGAGAAGTATGAGGAAGCTAAGAAGCTATTGTTTGATATGGCATATCGAGGGTGTAAACCTAAGCTGATCAATTTTTCTGTTTTGATGAATGATTTGGGAAAGAGAGGAAAGATCGAGGAGGCAAATTCTTTACTCCAAGAGATGAAGAAAAGGCGGCTTAAGCTGGATGTTGTGACATATAATATATTGATAAACTATCTTTGCAAGGAAGGTAAGACAGAGGAGGCTTATAAAGTATTGCTTGAAATGCAGATCAGTGGCTGTGAGCCAAATGCTGCAACATACAGGATGATGGTTGATGGTTTATGTCGGATTGGGGATTTTGAGGTCGGTCTGAATATTTTGAATGCAATGCTAGCCAGTGGACATTTTCCACGTTCTGAAACGTTTAATCATTTGGTTGTTGGCCTTCTGAACTCCGGGAATATTAGTGGTTCTTGCTTTGTTTTAGAAGAGATGGAGAAGAGGAAGGTAGCATTTGATTTGGAGAGCTGGGGATCTGTTGTAAAGTATGCTTGTAGTGAGGAGAATGATGCAAGTGGGCTTATGGACAAACTTACATCCATTCATCAAATGTAA 1377 0.3994 MNFQRAKSINRKPARAIPFLRHGNNKPPPRKQPQIQHHKTSKLRIRIPFITEIKETQNPEQALSLFNHYEQQGFTHHYPSYAALIYKFARSRNFQAVETILNHIQHTGMHCRETIFIALFQHYGKLLLHENAVELFHRMPHFNCVRTLQSLNTLLNVLVDNDRFDEASDSFKRCYEMGFRPNTVTFNIMIKGWLGKDQWEKACEVFDEMLQKKVQPSVVTYNSLIGFLCRRGDLDKAMSLLEDMNRKKKYANEVTYTLLMEGLCSLEKYEEAKKLLFDMAYRGCKPKLINFSVLMNDLGKRGKIEEANSLLQEMKKRRLKLDVVTYNILINYLCKEGKTEEAYKVLLEMQISGCEPNAATYRMMVDGLCRIGDFEVGLNILNAMLASGHFPRSETFNHLVVGLLNSGNISGSCFVLEEMEKRKVAFDLESWGSVVKYACSEENDASGLMDKLTSIHQM* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0349 458 MobiDBLite consensus disorder prediction 1 40 - -
Lan13g0349 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Lan13g0349 458 SUPERFAMILY TPR-like 146 386 IPR011990 GO:0005515
Lan13g0349 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Lan13g0349 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Lan13g0349 458 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 26 454 - -
Lan13g0349 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Lan13g0349 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Lan13g0349 458 Pfam PPR repeat family 181 225 IPR002885 -
Lan13g0349 458 Pfam PPR repeat family 322 370 IPR002885 -
Lan13g0349 458 Pfam PPR repeat family 252 298 IPR002885 -
Lan13g0349 458 Gene3D Tetratricopeptide repeat domain 16 173 IPR011990 GO:0005515
Lan13g0349 458 Gene3D Tetratricopeptide repeat domain 174 248 IPR011990 GO:0005515
Lan13g0349 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Lan13g0349 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Lan13g0349 458 Pfam PPR repeat 118 144 IPR002885 -
Lan13g0349 458 Pfam PPR repeat 395 423 IPR002885 -
Lan13g0349 458 PANTHER OS05G0548600 PROTEIN 26 454 - -
Lan13g0349 458 TIGRFAM PPR: pentatricopeptide repeat domain 360 391 IPR002885 -
Lan13g0349 458 TIGRFAM PPR: pentatricopeptide repeat domain 291 323 IPR002885 -
Lan13g0349 458 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Lan13g0349 458 TIGRFAM PPR: pentatricopeptide repeat domain 254 286 IPR002885 -
Lan13g0349 458 TIGRFAM PPR: pentatricopeptide repeat domain 324 358 IPR002885 -
Lan13g0349 458 TIGRFAM PPR: pentatricopeptide repeat domain 219 248 IPR002885 -
Lan13g0349 458 Gene3D Tetratricopeptide repeat domain 353 456 IPR011990 GO:0005515
Lan13g0349 458 Gene3D Tetratricopeptide repeat domain 249 352 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0349 Lan-Chr13 2290209 2292188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0349 131 455 Glycosyltransferase AT1G05670 28.000 1.90e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0349 - - lang:109363290 927.932