LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan13g0289	ATGGTACTCAACAATATTCTGGTCCTTGTTGCTCTTGTTCTTTCAATGAGCACTTCCAAAGTTACTTCAACTGAAGCTTTAGTTGGAGTTGACCCAATTCTTGATGTTGCCTCCTTGAATAGACAAAGTTTCCCTCCTGGTTTTATCTTTGGAGCTGGTTCCTCATCATATCAGTTTGAAGGTGCAGCAATGGAAGGTGGGAGAGGACCAAGTGTGTGGGATACCTTCACCCATAAATATCCAGACAAGATACAAGATAAAAGTAATGGAGATGTAGCCATTGACGAATATCACAACTACAAGGAGGATGTTGCAATTATGAAGGATATGAACTTGGATTCATACAGATTCTCCATATCTTGGTCTAGAATACTGCCAAATGGAAAGTTGAGTGGAGGTATAAATCAAGAAGGGGTCAACTATTACAACAACCTTATCAACGAGCTATTGGCTAATGGTATACAACCACTAGTGACTCTTTTTCATTGGGATCTTCCCCAAACCTTAGAAGATGAATATGGTGGCTTCTTAAGCCCTCTCATTATAAAAGATTTTCGGGATTATGCGGAAATTTGCTTCAAGGAATTCGGTGATAGAGTGAAGTATTGGGTTACTTTAAATGAACCATGGAGTTATAGCAGTAATGGGTATGTAAATGGAAGAATGGCACCAGGTCGTTGTTCTTCATGGGTGAACCCAAATTGCACTGGTGGTGATTCTGCCATAGAGCCATATTTGGTTACACACCACCAACTTCTTGCTCATGCAGCAGCAGTTCGTGTATACAAGACTATGTTTCAGGAATCTCAAAAGGGTTCAATAGGAATAACGTTGGTAGCTAATTGGTATCTACCACTCTCAGATACCAAGTTAGATCAAAAGGCTGCTGAAAGAGCAATTGACTTCATGTATGGATGGTATATGGATCCACTGACATCAGGAGATTATCCAAAAAGCATGCGCTCCCTTGTGAGAACACGTTTACCAAAGTTTACAGCAGAACAAAGCAAGTCACTGATTGGCTCTTTTGATTTTGTTGGCCTTAACTATTACTCTTCAACCTATGCCTCTGATGCACCTCATCTAAGCAATGCTAAACCTAGTTATGTCACAGATGCTTTGTTCAACCCTGCATTTGAGCGCAATGGGAAACCCATCGGTATAAAGATTGCTTCAGATTGGTTGTATGTTTATCCAAGAGGAATTAGAGACCTTTTGTTATACACCAAGGAAAAGTACAATAACCCATTGATTTACATTACTGAAAATGGTATAAATGAGTTTAATGATCCAACATTGTCACTAGAGGAATCACTTATGGATACTTTTAGAGTTGATTATCATTATCGTCATCTCTATTATCTTCGATCTGCGATTAGGAGTGGTGTAAATGTAAAGGGATATTATGTGTGGTCCTTGTTCGACAACTTTGAATGGTGCTCAGGCTATACAGTACGATTTGGAATGACCTTTGTGGATTATAAAAATGGGATGAAACGATACAAAAAACTCTCTGCATTATGGTTCAAGAGTTTTCTGAAGAAAGAAAGTAGATTCTATGATTCTAGTAAATAA	1575	0.3867	MVLNNILVLVALVLSMSTSKVTSTEALVGVDPILDVASLNRQSFPPGFIFGAGSSSYQFEGAAMEGGRGPSVWDTFTHKYPDKIQDKSNGDVAIDEYHNYKEDVAIMKDMNLDSYRFSISWSRILPNGKLSGGINQEGVNYYNNLINELLANGIQPLVTLFHWDLPQTLEDEYGGFLSPLIIKDFRDYAEICFKEFGDRVKYWVTLNEPWSYSSNGYVNGRMAPGRCSSWVNPNCTGGDSAIEPYLVTHHQLLAHAAAVRVYKTMFQESQKGSIGITLVANWYLPLSDTKLDQKAAERAIDFMYGWYMDPLTSGDYPKSMRSLVRTRLPKFTAEQSKSLIGSFDFVGLNYYSSTYASDAPHLSNAKPSYVTDALFNPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEFNDPTLSLEESLMDTFRVDYHYRHLYYLRSAIRSGVNVKGYYVWSLFDNFEWCSGYTVRFGMTFVDYKNGMKRYKKLSALWFKSFLKKESRFYDSSK*	525

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan13g0289	524	SUPERFAMILY	(Trans)glycosidases	33	514	IPR017853	-
	Lan13g0289	524	ProSitePatterns	Glycosyl hydrolases family 1 active site.	418	426	IPR018120	-
	Lan13g0289	524	Gene3D	Glycosidases	30	515	-	-
	Lan13g0289	524	PRINTS	Glycosyl hydrolase family 1 signature	342	356	IPR001360	GO:0004553\|GO:0005975
	Lan13g0289	524	PRINTS	Glycosyl hydrolase family 1 signature	418	426	IPR001360	GO:0004553\|GO:0005975
	Lan13g0289	524	PRINTS	Glycosyl hydrolase family 1 signature	441	452	IPR001360	GO:0004553\|GO:0005975
	Lan13g0289	524	PRINTS	Glycosyl hydrolase family 1 signature	462	479	IPR001360	GO:0004553\|GO:0005975
	Lan13g0289	524	PRINTS	Glycosyl hydrolase family 1 signature	486	498	IPR001360	GO:0004553\|GO:0005975
	Lan13g0289	524	Pfam	Glycosyl hydrolase family 1	41	516	IPR001360	GO:0004553\|GO:0005975
	Lan13g0289	524	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	48	62	IPR033132	-
	Lan13g0289	524	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	5	520	-	-
	Lan13g0289	524	PANTHER	GLYCOSYL HYDROLASE	5	520	IPR001360	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan13g0289	Lan-Chr13	1863934	1867137	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan13g0289	39	518	Glycoside Hydrolase	AT5G44640	55.509	0.0	575

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan13g0289	-		K01188	gmx:100777247	915.22