Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0257 ATGAGGCCTTTGAGATTGATAGATCCTCTGGTGTACCTTGACCATGGCAAGGCCATAAAATCTGGTTTTGCATCAAGCATTTTCACTTGTAATCAACTCATCCATCTTTATTCTAACCATGGCCTTGTGAAAGATGCCCATAAACTGTTTGATGAAATTTCCCACCCAAACGTGTTCTCTTGGAATGCCATTATTATGGCATACATAAAAGCACGTGACTTGACAAAAGCACGTGCCCTTTTTGACTCTGCCCCTCACAAAGATTTGGTTTCTTATAATTCCATGCTGTCGGCTTATGTTGGTGCTGACGAGTATGAAACTGATGCACTTGATTTGTTTACTACAATGCAATCTGCACGTGACACAATTGGGGTTGATGAGTTCACTCTGACAACCATGCTTAACTTGACTGCCAAGCTACATAAGGGGTGTTACGGGGAGCAGATACATTCATATATGATGAAAACCGCAAACAATTTAAGTAAATTTGCAGTGAGTTCTCTAATCGACATGTATTCTAAATGTGGTTCGTTTCGTGAAGCATGCAATGTATTCAGTGGTTGTGTTGGGAGGGTGGATTTGGTTTCAAAGAATGCAATGGTTGCAGCTTGTTGTAGGGAACGAAAGATGGACATAGCTTTGAGTGTGTTTTGGAAATATCCTGAATTAAATGATATTGTGTCTTGGAATACATTGATTGCAGGATATGCCCAGAATGGATTTATGGAGAAATCACTTGCCTTGTTTTCTGAGATGATAGAAAATGGTATTGGGTGCAATGAACACACTTTAGCAAGTGTTTTGAGTGCTTGCTCTGGTCTAAAGTCGATGAAACTTGGCGAGTGTGTCCATGCTTGGGTGTTGAAAATTGGTTACAATTCAAATCAATTTATTAACAGCGCCATTGTTGACCTCTACTGTAAGTGTGGGAATATTCGTTATGCAGAGTCAGTCTATGCAGGAATTAGGATTAAAAGCCCATTTGCAGCAGCTTCATTGATTTCAGGCTATTCATCTCAAGGCAACATGGCAGAAGCCCAAAGGCTTTTTGATTCTCTAACCGAACGAAACTCTGTTGTCTGGACAGCTCTGTGTTCTGGCTATGTCAAATCACAACAAAGTAAGGCGCTGTTCAAACTTTTTAGAGAGTTTACCACTACAGAAGGTCTAGTTCCTGATGCAATGATCATTATCAGTGTGCTTGGTGCCTGTGCAATACAAGCTACCCTTACACTAGGAAAGCAGATTCATGCTTACATCTTGAGAATGATATTTAATATGGATGAGAAATTGCTGAGTGCTTTGGTCGATATGTACTCAAAATGTGGGCATATCATATATGCTGGGAAAACCTTCCAACTAGTTCCAGTTAGTGATAGAGATGCAATCTTATATAATGTTATGATAGCTGGTTATGCTCATCACGGATTTGAAGATGATGCGATTCAGCTTTTTCAGGAAATGTTGAAGAAAAGTGTCAAGCCGGATGCAGTCACTTTTGTAGCACTTCTATCAGCTTGTCGGCACCGTGGATTAGTAGAGCTAGGAGAGCAATTTTTCATCTCAATGCAAGAACATTACAATGTAGTGCCCGAGATTTACCACTATGCATGTATGGTTGATATGTATGGAAAGGCTAATCAACTAGAAAAGGCGGTAGAGTTTATGAGGAAGATTCCCATACAAATAGATGCTACAATCTGGGGAGCATTTCTTAATGCTTGTCAGGTAAGCAGCAATACAGAGCTTGTCAAACAGGCAGAAGAGCAACTTTTAAAACTTGAGGCAGATAATGGGTCTAGGTATGTGCAATTGGCTAATGCCTATGCCGCTGAGGGGAAATGGGATGAGATGGGAAGAATAAGAAAGAAAATGAGAGGGAAGGAAGCTAAGAAGCTTGCTGGTTGCAGTTGGATATATGTGGACAATGACACTCATGTATTTACTTCAGGTGATGCATCCCATTCAAAAGCAGATGCAATCTATTCCACTTTGGTGTTCTTGAATGGGAAGCTGTATCTATCAGGCACAAAGCTTAAGCAACTTAATGACATGCAGGGTGATGTTGTTGAGGACATATTTTGA 2085 0.4034 MRPLRLIDPLVYLDHGKAIKSGFASSIFTCNQLIHLYSNHGLVKDAHKLFDEISHPNVFSWNAIIMAYIKARDLTKARALFDSAPHKDLVSYNSMLSAYVGADEYETDALDLFTTMQSARDTIGVDEFTLTTMLNLTAKLHKGCYGEQIHSYMMKTANNLSKFAVSSLIDMYSKCGSFREACNVFSGCVGRVDLVSKNAMVAACCRERKMDIALSVFWKYPELNDIVSWNTLIAGYAQNGFMEKSLALFSEMIENGIGCNEHTLASVLSACSGLKSMKLGECVHAWVLKIGYNSNQFINSAIVDLYCKCGNIRYAESVYAGIRIKSPFAAASLISGYSSQGNMAEAQRLFDSLTERNSVVWTALCSGYVKSQQSKALFKLFREFTTTEGLVPDAMIIISVLGACAIQATLTLGKQIHAYILRMIFNMDEKLLSALVDMYSKCGHIIYAGKTFQLVPVSDRDAILYNVMIAGYAHHGFEDDAIQLFQEMLKKSVKPDAVTFVALLSACRHRGLVELGEQFFISMQEHYNVVPEIYHYACMVDMYGKANQLEKAVEFMRKIPIQIDATIWGAFLNACQVSSNTELVKQAEEQLLKLEADNGSRYVQLANAYAAEGKWDEMGRIRKKMRGKEAKKLAGCSWIYVDNDTHVFTSGDASHSKADAIYSTLVFLNGKLYLSGTKLKQLNDMQGDVVEDIF* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0257 694 Pfam Pentatricopeptide repeat domain 21 68 IPR002885 -
Lan13g0257 694 Pfam PPR repeat family 225 271 IPR002885 -
Lan13g0257 694 Pfam PPR repeat family 461 507 IPR002885 -
Lan13g0257 694 Gene3D Tetratricopeptide repeat domain 282 419 IPR011990 GO:0005515
Lan13g0257 694 Gene3D Tetratricopeptide repeat domain 144 281 IPR011990 GO:0005515
Lan13g0257 694 Gene3D Tetratricopeptide repeat domain 20 143 IPR011990 GO:0005515
Lan13g0257 694 TIGRFAM PPR: pentatricopeptide repeat domain 28 53 IPR002885 -
Lan13g0257 694 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Lan13g0257 694 TIGRFAM PPR: pentatricopeptide repeat domain 59 83 IPR002885 -
Lan13g0257 694 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Lan13g0257 694 Coils Coil 577 597 - -
Lan13g0257 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Lan13g0257 694 Pfam E motif 579 639 IPR046848 -
Lan13g0257 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
Lan13g0257 694 Pfam PPR repeat 535 558 IPR002885 -
Lan13g0257 694 Pfam PPR repeat 165 186 IPR002885 -
Lan13g0257 694 Pfam PPR repeat 196 218 IPR002885 -
Lan13g0257 694 Pfam PPR repeat 332 357 IPR002885 -
Lan13g0257 694 Gene3D Tetratricopeptide repeat domain 433 661 IPR011990 GO:0005515
Lan13g0257 694 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 326 652 - -
Lan13g0257 694 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 70 352 - -
Lan13g0257 694 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 219 - -
Lan13g0257 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Lan13g0257 694 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0257 Lan-Chr13 1624997 1630263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0257 16 665 Glycoside Hydrolase AT3G49170 30.581 4.46e-92 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0257 - - gmx:100803987 1111.29