Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0253 ATGTCTGTCTCCGCTCATATCTGCCTTCTCCCTTTAACTAGAACCAACCTCGCCGTGCCGGAAAATCTCATCAGAATTCAAACCCGGAAACCTTTCTCCCTCCGATGCTCCGGCGACTCCACTCCGGCGGTGGCTGATTCGGATTTCGATGCAAAGGTGTTCAGGAAGAACTTGACTAGGAGCAAGAATTATAATCGCAAAGGTTTCGGTCACAAGGAAGAGACACTCCAGCTCCTAAATCGCGAGTACCAAGCAAGTGACATCATTAAGACGTTGAAGGAAAACGGGTATGAGTATACATGGGGCAACGTCACCGTGAGGCTAGCTGAAGCCTATGGCTTTTGTTGGGGAGTTGAGAGAGCTGTTCAAATTGCTTATGAGGCGAGGAAACAGTTCCCAACTGAGTCACTATGGCTTACCAATGAAATCATTCACAACCCAACAGTTAATAAGCGTCTGGAGGAGATGGAAGTGCAGACCATCCCCGTGGAGGGAGGAAAAAAGCAATTTGAGGTTGTCAACAAGGGTGATGTAGTCATATTGCCCGCTTTTGGGGCAGCAGTGGATGAGATGTTGACTTTGAGTGACAAAAATGTTCAAATTGTCGATACAACTTGCCCATGGGTTTCGAAGGTATGGAATAGTGTTGAAAAGCACAAGAAAGGAGATTATACCTCAATAATTCATGGTAAATATAGCCATGAGGAAACTGTGGCAACTGCATCTTTTGCTGGAAAGTATGTTATCGTGAAGAATATGGCAGAGGCTGAATATGTCTGTGACTATGTTCTTGGTGGTGAGTTAAATGGCTCCAGTTCAACCAAAGAAGCATTTTTAGAGAAATTTAAATTTGCAGTTTCTGAAGGCTTTGATCCAGACAATGACCTGATAAAATTAGGCATTGCAAATCAGACAACAATGCTGAAGGGAGAGACTGAAGAAATTGGGAAACTATTGGAGAGGACTATGATGCGCAAATTTGGTGTAGAAAAAGTCAACGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACCCAGGAGAGACAAGATGCAATGTACAAGCTGGTGGAGAAAGATTTGGATCTGATCTTGGTAGTTGGTGGATGGAACTCAAGCAATACATCACACCTGCAAGAGATAGCCGAGGAGCGTGGAATTCCTTCGTACTGGATTGACAGTGAGCAAAGAATTGGTCCAGGAAACAGAATATCACACAAGTTGAATCACGGCGAACTGGTGGAAAAAGAAAACTTTCTGCCAGCAGGTCCAATAACAATCGGCGTGACTTCTGGCGCATCCACACCGGACAAGGCTGTTGAAGATGCACTTACCAAAGTGTTTGACTTAAAACGTGAAGAGGCACTGCAACTCTAG 1377 0.4444 MSVSAHICLLPLTRTNLAVPENLIRIQTRKPFSLRCSGDSTPAVADSDFDAKVFRKNLTRSKNYNRKGFGHKEETLQLLNREYQASDIIKTLKENGYEYTWGNVTVRLAEAYGFCWGVERAVQIAYEARKQFPTESLWLTNEIIHNPTVNKRLEEMEVQTIPVEGGKKQFEVVNKGDVVILPAFGAAVDEMLTLSDKNVQIVDTTCPWVSKVWNSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYVIVKNMAEAEYVCDYVLGGELNGSSSTKEAFLEKFKFAVSEGFDPDNDLIKLGIANQTTMLKGETEEIGKLLERTMMRKFGVEKVNEHFISFNTICDATQERQDAMYKLVEKDLDLILVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRISHKLNHGELVEKENFLPAGPITIGVTSGASTPDKAVEDALTKVFDLKREEALQL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0253 458 Gene3D - 115 205 - -
Lan13g0253 458 CDD lytB_ispH 106 447 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lan13g0253 458 Gene3D - 206 339 - -
Lan13g0253 458 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 13 457 - -
Lan13g0253 458 Gene3D - 340 457 - -
Lan13g0253 458 Pfam LytB protein 106 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lan13g0253 458 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 106 446 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lan13g0253 458 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 104 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0253 Lan-Chr13 1603587 1606821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0253 K03527 - gmx:100818067 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0253 13 1603587 1606821 Lan13g0253 13 1603587 1606821 ECH
Lan7g0166 7 1017392 1020815 Lan13g0253 13 1603587 1606821 LSH