Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0245 ATGGCAGTTCCATCTTTGTCACTTCTAGCGAGTCCCACCTTCACTATCACTTCTCGCGCCACAAATTCGTCTCATCTCAATTTCTCTCACAGAAACCCTTGCTCGATTAGTTCTTCCTTGCCAAGCCCCTATGGCCGTACTTCAAAACTTGGGCTATCAAGTAAAAGTCCCCCCTTTCCTTTAAAACTTGATGAGAAAAATACCCATGATGCTAGTACAAGTTATGGTGCTATTGAAGCCAAGTCGGGGAATCCACCAATGGCACCAGCAGTTATGACTCCCGAAGGGCCTCTTGATATCTCATCTGTTTTGTTCAGGAATCGTATAATATTCATAGGGCAGCCTATTAATTCACAGGTTGCTCAACGAGTGATATCACAGCTTGTGACTCTGGCTACTATTGATGCAAATGCAGATATACTGGTGTATATAAACTGCCCTGGTGGAAGCACATATTCAGTGTTGGCAATTTATGATTGCATGTCCTGGATCAAGCCCAAGGTTGGCACTGTATGCTTCGGAGTAGCTGCAAGCCAAGGAGCACTTCTCCTTGCAGGTGGGGAGAAGGGAATGCGCTATGCAATGCCAAATGCACGAATAATGATACATCAACCACAGAGTGGATGCGGAGGTCATGTTGAGGACGTGAGACGCCAAGTGAATGAAGCTGTTCAATCTCGCCATAAAATTGACAAGATGTATAGTGCTTTCACTGGACAGTCCATAGAGAAGGTGCAACAGTACACTGAGAGGGACCGTTTTCTGTCTGTTTCTGAGGCGTTGGAGTTTGGTCTTATTGATGGGGTCCTGGAAACAGAATATTGA 825 0.4533 MAVPSLSLLASPTFTITSRATNSSHLNFSHRNPCSISSSLPSPYGRTSKLGLSSKSPPFPLKLDEKNTHDASTSYGAIEAKSGNPPMAPAVMTPEGPLDISSVLFRNRIIFIGQPINSQVAQRVISQLVTLATIDANADILVYINCPGGSTYSVLAIYDCMSWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMIHQPQSGCGGHVEDVRRQVNEAVQSRHKIDKMYSAFTGQSIEKVQQYTERDRFLSVSEALEFGLIDGVLETEY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0245 274 CDD S14_ClpP_2 99 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0245 274 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 87 273 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0245 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 16 274 IPR023562 -
Lan13g0245 274 Pfam Clp protease 99 272 IPR023562 -
Lan13g0245 274 Gene3D - 79 274 - -
Lan13g0245 274 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 16 274 - -
Lan13g0245 274 SUPERFAMILY ClpP/crotonase 97 272 IPR029045 -
Lan13g0245 274 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0245 274 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0245 274 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0245 274 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0245 274 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lan13g0245 274 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0245 Lan-Chr13 1527093 1532529 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0245 K01358 - gmx:100799710 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0245 13 1527093 1532529 Lan13g0245 13 1527093 1532529 ECH