Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0237 ATGGCAGAAGAAGCAATTCTGGGTTACTTAGAACACAATGATGAGATTAAAGACTCTGGTGAATTCGCAGAAGAACGTAAGATTGAGCATAATGAGATAGTGAATGTGATAAAGAGTCTTCATGGTTTTAGATATGTGGATGCTGAAGACATTAAGAGAGAGTCATGGGTATTAACCGATGAAGGGAAGATATATGCAGAAGCAGGGTCACCAGAAATGCAACTATTTTTGGCAATACCTGAAGAGGGTATCCCGAAAGATGAGCTTCAAAAAAAGGTTGGGCCTTCACTTTTCAAGATTGGTTGTGCCCAGGCTGCTAAGAACAAATGGCTTGATATGGGAAAGCAACTTATCTCTAGAAAGGTCCAACATGTTGATGATAAGGTCAAAGTTCTGCTTCTTCAAATACAACAAGGACAGGTCATTGGTTCAGATGATATCAAGGCACTCAAAGCACGGAAGCTTATTGTTCCACAGACATGGAAGGGTTACTCGGTGAAAAAGGGTCCTAACTATGCACCAAAAAGAAAGCAGGTTGTCACTGATTTAACTCGGGATAATTTTCAAAGTGGTGAGTGGAAGGAGTTAGAGTTCAAAGAGTACAATTACAGCGCTAAAGGTCAGCCTCTTGAGGGTGGTCATCTTCATCCGCTGCTGAAGGTACGGTCTCAACTGAAAGAGATTTTCCTCTGCATGGGGTTTGAGGAGATGCCGACAAATAATTTCGTGGAGAGTAGCTTCTGGAACTTCGATGCCTTGTTCCAACCCCAACAACACCCTGCTCGCGATTCACATGACACTTTCTTTTTGGAAACTCCTTCAACAACAAACATACTACCAGAAGATTATGTTCAGAGGGTGAAGCAAGTTCATGAATCTGGTGGTTATGGGTCTAGGGGATATGCATATGACTGGAAAAGAGAGGAAGCAAATAAAAACCTCCTGCGAACCCACACAACTGCTGTTTCCTCCCGGATGCTTTACCAGCTGGCAAAGAAACCTTTTTCTCCAAAGAAATTTTTCTCTATAGATCGTGTATTCAGAAATGAGGCAGTCGATCGAACTCATCTTGCTGAGTTCCACCAGATAGAAGGCCTGGTGTGTGACCGAGGTCTCACTCTCTGTGACTTAATAGGAGTACTGCATGATTTCTTCTCACGCATGGGCATGACCAAGCTGAAGTTCAAACCAGCATATAACCCTTACACCGAACCTAGCATGGAGATTTTCAGTTATCATGAAGGCTTTAAAAAATGGGTAGAAGTGGGAAATTCTGGCATGTTCAGACCTGAAATGTTGCAGCCAATGGGACTTCCTGAAGATGTTCAAGTTATTGCATGGGGTCTTTCCCTTGAAAGGCCAACGATGATATTATATGGGATAGATAACATCAGAGATCTCTTTGGACACAAGGTGGATTTAGGCCTTATGAAGAAAAATCCAATATGCCGTCTTGGAATTGAATAA 1467 0.4233 MAEEAILGYLEHNDEIKDSGEFAEERKIEHNEIVNVIKSLHGFRYVDAEDIKRESWVLTDEGKIYAEAGSPEMQLFLAIPEEGIPKDELQKKVGPSLFKIGCAQAAKNKWLDMGKQLISRKVQHVDDKVKVLLLQIQQGQVIGSDDIKALKARKLIVPQTWKGYSVKKGPNYAPKRKQVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLEGGHLHPLLKVRSQLKEIFLCMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLETPSTTNILPEDYVQRVKQVHESGGYGSRGYAYDWKREEANKNLLRTHTTAVSSRMLYQLAKKPFSPKKFFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFSRMGMTKLKFKPAYNPYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLMKKNPICRLGIE* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0237 488 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 221 481 IPR006195 -
Lan13g0237 488 PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT 3 486 - -
Lan13g0237 488 SUPERFAMILY Class II aaRS and biotin synthetases 201 473 IPR045864 -
Lan13g0237 488 Gene3D - 7 199 - -
Lan13g0237 488 TIGRFAM pheS: phenylalanine--tRNA ligase, alpha subunit 167 478 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Lan13g0237 488 Gene3D - 71 125 - -
Lan13g0237 488 PANTHER PHENYLALANYL-TRNA SYNTHETASE 3 486 - -
Lan13g0237 488 Pfam tRNA synthetases class II core domain (F) 201 473 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Lan13g0237 488 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Lan13g0237 488 Gene3D - 58 156 - -
Lan13g0237 488 CDD PheRS_alpha_core 216 473 - -
Lan13g0237 488 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Lan13g0237 488 Gene3D Bira Bifunctional Protein; Domain 2 216 487 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0237 Lan-Chr13 1472028 1477632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0237 K01889 - gmx:100792325 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0237 13 1472028 1477632 Lan13g0237 13 1472028 1477632 ECH
Lan7g0152 7 931026 936041 Lan13g0237 13 1472028 1477632 LSH